Identification of a G2-like porcine rotavirus bearing a novel VP4 type, P[32] | Veterinary Research, a journal on Animal Infection

Open Access

Issue		Vet. Res. Volume 41, Number 5, September–October 2010


Number of page(s)		12
DOI		https://doi.org/10.1051/vetres/2010045
Published online		29 July 2010
How to cite this article		Vet. Res. (2010) 41:73

Abe M., Ito N., Morikawa S., Takasu M., Murase T., Kawashima T., et al., Molecular epidemiology of rotaviruses among healthy calves in Japan: isolation of a novel bovine rotavirus bearing new P and G genotypes, Virus Res. (2009) 144:250–257. [CrossRef] [PubMed] [Google Scholar]
Arias C.F., Romero P., Alvarez V., Lopez S., Trypsin activation pathway of rotavirus infectivity, J. Virol. (1996) 70:5832–5839. [PubMed] [Google Scholar]
Arista S., Giammanco G.M., De Grazia S., Colomba C., Martella V., Genetic variability among serotype G4 Italian human rotaviruses, J. Clin. Microbiol. (2005) 43:1420–1425. [CrossRef] [PubMed] [Google Scholar]
Bányai K., Martella V., Jakab F., Melegh B., Szücs G., Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene, J. Clin. Microbiol. (2004) 42:4338–4443. [CrossRef] [PubMed] [Google Scholar]
Banyai K., Bogdan A., Szucs G., Arista S., De Grazia S., Kang G., et al., Assignment of the group A rotavirus NSP4 gene into genogroups using a heminested PCR assay: a rapid and reproducible assay for strain surveillance, J. Med. Microbiol. (2009) 58:303–311. [CrossRef] [PubMed] [Google Scholar]
Chan-It W., Khamrin P., Saekhow P., Pantip C., Thongprachum A., Peerakome S., et al., Multiple combinations of P[13]-like genotype with G3, G4, and G5 in porcine rotaviruses, J. Clin. Microbiol. (2008) 46:1169–1173. [CrossRef] [PubMed] [Google Scholar]
Ciarlet M., Ludert J.E., Liprandi F., Comparative amino acid sequence analysis of the major outer capsid protein (VP7) of porcine rotaviruses with G3 and G5 serotype specificities isolated in Venezuela and Argentina, Arch. Virol. (1995) 140:437–451. [CrossRef] [PubMed] [Google Scholar]
Ciarlet M., Hoshino Y., Liprandi F., Single point mutations may affect the serotype reactivity of serotype G11 porcine rotavirus strains: a widening spectrum?, J. Virol. (1997) 71:8213–8220. [PubMed] [Google Scholar]
Ciarlet M., Liprandi F., Conner M.E., Estes M.K., Species specificity and interspecies relatedness of NSP4 genetic groups by comparative NSP4 sequence analyses of animal rotaviruses, Arch. Virol. (2000) 145:371–383. [CrossRef] [PubMed] [Google Scholar]
Ciarlet M., Estes M.K., Rotaviruses: basic biology, epidemiology and methodologies, in: Bitton G. (Ed.), Encyclopedia of Environmental Microbiology, John Wiley and Sons, New York, USA, 2002, pp. 2753–2773. [Google Scholar]
Collins P.J., Martella V., O’Shea H., Detection and characterization of Group C Rotaviruses in asymptomatic piglets in Ireland, J. Clin. Microbiol. (2008) 46:2973–2979. [CrossRef] [PubMed] [Google Scholar]
Crawford S.E., Mukherjee S.K., Estes M.K., Lawton J.A., Shaw A.L., Ramig R.F., Prasad B.V., Trypsin cleavage stabilizes the rotavirus VP4 spike, J. Virol. (2001) 75:6052–6061. [CrossRef] [PubMed] [Google Scholar]
Das B.K., Gentsch J.R., Cicirello H.G., Woods P.A., Gupta A., Ramachandran M., et al., Characterization of rotavirus strains from newborns in New Delhi, India, J. Clin. Microbiol. (1994) 32:1820–1822. [PubMed] [Google Scholar]
Dyall-Smith M.L., Lazdins I., Tregear G.W., Holmes I.H., Location of the major antigenic sites involved in rotavirus serotype-specific neutralization, Proc. Natl. Acad. Sci. USA (1986) 83:3465–3468. [CrossRef] [Google Scholar]
Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., et al., Identification of group A rotavirus gene 4 types by polymerase chain reaction, J. Clin. Microbiol. (1992) 30:1365–1373. [PubMed] [Google Scholar]
Ghosh S., Varghese V., Samajdar S., Bhattacharya S.K., Kobayashi N., Naik T.N., Molecular characterization of a porcine group A rotavirus strain with G12 genotype specificity, Arch. Virol. (2006) 151:1329–1344. [CrossRef] [PubMed] [Google Scholar]
Gorziglia M., Larralde G., Kapikian A., Chanock R.M., Antigenic relationships among human rotaviruses as determined by outer capsid protein VP4, Proc. Natl. Acad. Sci. USA (1990) 87:7155–7159. [CrossRef] [Google Scholar]
Gouvea V., Glass R.I., Woods P., Taniguchi K., Clark H.F., Forrester B., Fang Z.Y., Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens, J. Clin. Microbiol. (1990) 28:276–282. [PubMed] [Google Scholar]
Gouvea V., Santos N., Timenetsky M.C., Identification of bovine, porcine rotavirus G types by PCR, J. Clin. Microbiol. (1994) 32:1338–1340. [PubMed] [Google Scholar]
Gouvea V., Santos N., Timenetsky M.C., VP4 typing of bovine and porcine group A rotaviruses by PCR, J. Clin. Microbiol. (1994) 32:1333–1337. [PubMed] [Google Scholar]
World-Health-Organization, External review of burden of disease attributable to rotavirus, 30 November to 1 December 2005, World Health Organization, Geneva, Switzerland. [Google Scholar]
Hall T.A., BioEdit: a user-friendly biological sequence alignment and analysis program for Windows 95/98/NT, Nucl. Acids Symp. Ser. (1999) 41:95–98. [Google Scholar]
Heaton P.M., Ciarlet M., The pentavalent rotavirus vaccine: Discovery to licensure and beyond, Infect. Clin. Dis. (2007) 45:1618–1624. [CrossRef] [Google Scholar]
Iturriza Gómara M., Wong C., Blome S., Desselberger U., Gray J., Rotavirus subgroup characterisation by restriction endonuclease digestion of a cDNA fragment of the VP6 gene, J. Virol. Methods (2002) 105:99–103. [CrossRef] [PubMed] [Google Scholar]
Kapikian A.Z., Hoshino Y., Chanock R.M., Rotaviruses, in: Knipe D.M., Howley P.M., Griffin D.E., Lamb R.A., Martin M.A., Roizman B., Strais S.E. (Eds.), Fields Virology, 4th edition, Lippincott Williams and Wilkins, Philadelphia, 2001, pp. 1787–1833. [Google Scholar]
Khamrin P., Maneekarn N., Peerakome S., Chan-it W., Yagyu F., Okitsu S., Ushijima H., Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain, Virology (2007) 361:243–252. [CrossRef] [PubMed] [Google Scholar]
Kobayashi N., Taniguchi K., Urasawa S., Analysis of the newly identified neutralization epitopes on VP7 of human rotavirus serotype 1, J. Gen. Virol. (1991) 72:117–124. [CrossRef] [PubMed] [Google Scholar]
Kumar S., Tamura K., Jakobsen I.B., Nei M., MEGA2: Molecular evolutionary genetics analysis software, Bioinformatics (2001) 17:1244–1245. [CrossRef] [PubMed] [Google Scholar]
Larralde G., Kapikian L.B., Gorziglia M., Serotype-specific epitope(s) present on the VP8* subunit of rotavirus VP4, J. Virol. (1991) 65:3213–3218. [PubMed] [Google Scholar]
Larralde G., Gorziglia M., Distribution of conserved and serotype-specific epitopes on the VP8* subunit of rotavirus VP4, J. Virol. (1992) 72:117–124. [Google Scholar]
Lecce J.G., King M.W., Role of rotavirus (reo-like) in weanling diarrhea of pigs, J. Clin. Microbiol. (1978) 8:454–458. [PubMed] [Google Scholar]
Lee J.B., Youn S.J., Nakagomi T., Park S.Y., Kim T.J., Song C.S., et al., Isolation, serologic and molecular characterization of the first G3 caprine rotavirus, Arch. Virol. (2003) 148:643–657. [CrossRef] [PubMed] [Google Scholar]
Lennon G., Reidy N., Cryan B., Fanning S., O’Shea H., Changing profile of Rotavirus in Ireland: Predominance of P[8] and emergence of P[6] and P[9] in mixed infections, J. Med. Virol. (2008) 80:524–530. [CrossRef] [PubMed] [Google Scholar]
Liprandi F., Gerder M., Bastidas Z., Lopez J.A., Pujol F.H., Ludert J.E., et al., A novel type of VP4 carried by a porcine rotavirus strain, Virology (2003) 315:373–380. [CrossRef] [PubMed] [Google Scholar]
Martella V., Pratelli A., Greco G., Tempesta M., Ferrari M., Losio M.N., Buonavoglia C., Genomic characterization of porcine rotaviruses in Italy, Clin. Diagn. Lab. Immunol. (2001) 8:129–132. [PubMed] [Google Scholar]
Martella V., Ciarlet M., Camarda A., Pratelli A., Tempesta M., Greco G., et al., Molecular characterization of the VP4, VP6, VP7, and NSP4 genes of lapine rotaviruses identified in Italy: emergence of a novel VP4 genotype, Virology (2003) 314:358–370. [CrossRef] [PubMed] [Google Scholar]
Martella V., Ciarlet M., Pratelli A., Arista S., Terio V., Elia G., et al., Molecular analysis of the VP7, VP4, VP6, NSP4, and NSP5/6 genes of a buffalo rotavirus strain: identification of the rare P[3] rhesus rotavirus-like VP4 gene allele, J. Clin. Microbiol. (2003) 41:5665–5675. [CrossRef] [PubMed] [Google Scholar]
Martella V., Ciarlet M., Baselga R., Arista S., Elia G., Lorusso E., et al., Sequence analysis of the VP7 and VP4 genes identifies a novel VP7 gene allele of porcine rotaviruses, sharing a common evolutionary origin with human G2 rotaviruses, Virology (2005) 337:111–123. [CrossRef] [PubMed] [Google Scholar]
Martella V., Bányai K., Ciarlet M., Iturriza-Gomara M., Lorusso E., De Grazia S., et al., Relationships among porcine and human P[6] rotaviruses: evidence that the different human P[6] lineages have originated from multiple interspecies transmission events, Virology (2006) 344:509–519. [CrossRef] [PubMed] [Google Scholar]
Martella V., Ciarlet M., Bányai K., Lorusso E., Cavalli A., Corrente M., et al., Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain, Virology (2006) 346:301–311. [CrossRef] [PubMed] [Google Scholar]
Martella V., Ciarlet M., Banyai K., Lorusso E., Arista S., Lavazza A., et al., Identification of group A porcine rotavirus strains bearing a novel VP4 (P) genotype in Italian Swine Herds, J. Clin. Microbiol. (2007) 45:577–580. [CrossRef] [PubMed] [Google Scholar]
Martella V., Bányai K., Matthijnssens J., Buonavoglia C., Ciarlet M., Zoonotic aspects of rotaviruses, Vet. Microbiol. (2010) 140:246–255. [CrossRef] [PubMed] [Google Scholar]
Mascarenhas J.D., Linhares A.C., Gabbay Y.B., Leite J.P., Detection and characterization of rotavirus G and P types from children participating in a rotavirus vaccine trial in Belem, Brazil. Mem. Inst. Oswaldo Cruz (2002) 97:113–117. [Google Scholar]
Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., McDonald S., et al., Full genome-based classification of rotaviruses reveals common origin between human Wa-like and Porcine rotavirus strains and human DS-1-like and bovine rotavirus strains, J. Virol. (2008) 82:3204–3219. [CrossRef] [PubMed] [Google Scholar]
Matthijnssens J., Ciarlet M., Rahman M., Attoui H., Bányai K., Estes M.K., et al., Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments, Arch. Virol. (2008) 153:1621–1629. [CrossRef] [PubMed] [Google Scholar]
McNeal M.M., Sestak K., Choi A.H., Basu M., Cole M.J., Aye P.P., et al., Development of a rotavirus-shedding model in rhesus macaques,using a homologous wild-type rotavirus of a new P genotype, J. Virol. (2005) 79:944–954. [CrossRef] [PubMed] [Google Scholar]
Mori Y., Borgan M.A., Ito N., Sugiyama M., Minamoto N., Diarrhea-inducing activity of avian rotavirus NSP4 glycoproteins, which differ greatly from mammalian rotavirus NSP4 glycoproteins in deduced amino acid sequence in suckling mice, J. Virol. (2002) 76:5829–5834. [CrossRef] [PubMed] [Google Scholar]
Nishikawa K., Hoshino Y., Taniguchi K., Green K.Y., Greenberg H.B., Kapikian A.Z., et al., Rotavirus VP7 neutralization epitopes of serotype 3 strains, Virology (1989) 171:503–515. [CrossRef] [PubMed] [Google Scholar]
Okada N., Matsumoto Y., Bovine rotavirus G and P types and sequence analysis of the VP7 gene of two G8 bovine rotavirus from Japan, Vet. Microbiol. (2002) 84:297–305. [CrossRef] [PubMed] [Google Scholar]
Parra G.I., Vidales G., Gomez J.A., Fernandez F.M., Parreno V., Bok K., Phylogenetic analysis of porcine rotavirus in Argentina: Increasing diversity of G4 strains and evidence of interspecies transmission, Vet. Microbiol. (2008) 126:243–250. [CrossRef] [PubMed] [Google Scholar]
Rahman M., Matthijnssens J., Nahar S., Podder G., Sack D.A., Azim T., Van Ranst M., Characterization of a novel P[25],G11 group A rotavirus, J. Clin. Microbiol. (2005) 43:3208–3212. [CrossRef] [PubMed] [Google Scholar]
Rao C.D., Gowda K., Reddy B.S.Y., Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses, Virology (2000) 276:104–113. [CrossRef] [PubMed] [Google Scholar]
Saif L.J., Rosen B., Parwani A., Animal Rotaviruses, in: Kapikian A. (Ed.), Viral infections of the gastrointestinal tract, Marcel Dekker, Inc., New York, 1994, pp. 279–367. [Google Scholar]
Saif L.J., Fernandez F.M., Group A rotavirus veterinary vaccines, J. Infect. Dis. (1996) 174:S98–S106. [PubMed] [Google Scholar]
Sanchez-Fauquier A., Roman E., Colomina J., Wilhelmi I., Glass R.I., Jiang B., First detection of group C rotavirus in children with acute diarrhoea in Spain, Arch. Virol. (2003) 148:399–404. [CrossRef] [PubMed] [Google Scholar]
Santos N., Volotão E.M., Soares C.C., Albuquerque M.C.M., da Silva F.M., Chizhikov V., Hoshino Y., VP7 gene polymorphism of serotype G9 rotavirus strand its impact on G genotype determination by PCR, Virus Res. (2002) 90:1–14. [CrossRef] [PubMed] [Google Scholar]
Santos N., Hoshino H., Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective vaccine, Rev. Med. Virol. (2005) 15:29–56. [CrossRef] [PubMed] [Google Scholar]
Schumann T., Hotzel H., Otto P., Johne R., Evidence of interspecies transmission and reassortment among avian group A rotaviruses, Virology (2009) 386:334–343. [CrossRef] [PubMed] [Google Scholar]
Solberg O.D., Hasing M.E., Trueba G., Eisenberg J.N., Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus, Virology (2009) 385:58–67. [CrossRef] [PubMed] [Google Scholar]
Steyer A., Poljsak-Prijatelj M., Barlic-Maganja D., Jamnikar U., Mijovski J.Z., Marin J., Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia, Virology (2006) 359:275–282. [CrossRef] [PubMed] [Google Scholar]
Trojnar E., Otto P., Johne R., The first complete genome sequence of a chicken group A rotavirus indicates independent evolution of mammalian and avian strains, Virology (2009) 386:325–333. [CrossRef] [PubMed] [Google Scholar]
Urasawa S., Hasegawa A., Taniguchi T., Wakasugi F., Suzuki H., Inouve S., et al., Antigenic and genetic analyses of human rotaviruses in Chiang Mai, Thailand: evidence for a close relationship between human and animal rotaviruses, J. Infect. Dis. (1992) 166:227–234. [PubMed] [Google Scholar]
Ursu K., Kisfali P., Rigó D., Ivanics E., Erdélyi K., Dán A., et al., Molecular analysis of the VP7 gene of pheasant rotaviruses identifies a new genotype designated G23, Arch. Virol. (2009) 154:1365–1369. [CrossRef] [PubMed] [Google Scholar]
Varghese V., Das S., Singh N.B., Kojima K., Bhattacharya S.K., Krishnan T., et al., Molecular characterization of a human rotavirus reveals porcine characteristics in most of the genes including VP6 and NSP4, Arch. Virol. (2004) 149:155–172. [CrossRef] [PubMed] [Google Scholar]
Vesikari T., Matson D., Dennehy P., Van Damme P., Santosham M., Rodriguez Z., et al., Safety and efficacy of a pentavalent human-bovine (WC3) reassortant rotavirus vaccine, N. Engl. J. Med. (2006) 354:23–33. [CrossRef] [PubMed] [Google Scholar]
Winiarczyk S., Paul P.S., Mummidi S., Panek R., Gradzki Z., Survey of porcine rotavirus G and P genotype in Poland and the United States using RT-PCR, J. Vet. Med. B Infect. Dis. Vet. Public Health (2002) 49:373–378. [PubMed] [Google Scholar]