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Vet. Res.
Volume 32, Number 3-4, May-August 2001
Mechanisms of resistance to antibiotics in animal and zoonotic pathogens
Page(s) 363 - 380
DOI https://doi.org/10.1051/vetres:2001130
How to cite this article Vet. Res. (2001) 363-380
  1. Aarts H.J.M., Lith van L.A.J.T., Keijer J., High-Resolution genotyping of Salmonella strains by AFLP fingerprinting, Lett. Appl. Microbiol. 26 (1998) 131-135 [PubMed].
  2. Aarts H.J.M., Hakemulder L.E., Van Hoef A.M.A., Genomic Typing of Listeria monocytogenes Strains by Automated Laser Fluorescence Analysis of AFLP fingerprint patterns, Int. J. Food Microbiol. 49 (1999) 95-102 [CrossRef] [PubMed].
  3. Adams C.A., Austin B., Meaden P.G., McIntosh D., Molecular characterization of plasmid- mediated oxytetracycline resistance in Aeromonas salmonicida, Appl. Environ. Microbiol. 64 (1998) 4194-4201 [PubMed].
  4. Anthony R.M., Brown T.J., French G.L., Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array, J. Clin. Microbiol. 38 (2000) 781-788 [PubMed].
  5. Arnold C., Metherell L., Clewley P., Stanley J., Predictive modelling of fluorescent AFLP: a new approach to the molecular epidemiology of E. coli, Res. Microbiol. 150 (1999) 33-44 [CrossRef] [PubMed].
  6. Arthur M., Arbeit R.D., Kim C., Beltran P., Crowe H., Steinbach S., Campanelli C., Wilson R.A., Selander R.K., Goldstein R., Restriction fragment length polymorphisms among uropathogenic Escherichia coli isolates: pap-related sequences compared with rrn operons, Infect. Immun. 58 (1990) 471-479 [PubMed].
  7. Carlson S.A., Bolton L.F., Briggs C.E., Hurd H.S., Sharma V.K., Fedorka Cray P.J., Jones B.D., Detection of multiresistant Salmonella typhimurium DT104 using multiplex and fluorogenic PCR, Mol. Cell. Probes 13 (1999) 213-222 [CrossRef] [PubMed].
  8. Cimolai N., Cogswell A., Hunter R., Nosocomial transmission of penicillin-resistant Streptococcus pneumoniae, Pediatr. Pulmonol. 27 (1999) 432-434 [PubMed].
  9. Cloeckaert A., Boumedine K.S., Flaujac G., Imberechts H., D'-Hooghe I., Chaslus-Dancla E., Occurrence of a Salmonella enterica serovar Typhimurium DT104-like antibiotic resistance gene cluster including the floR gene in S. enterica serovar Agona, Antimicrob. Agents Chemother. 44 (2000) 1359-1361 [CrossRef] [PubMed].
  10. Daly M., Fanning S., Characterization and chromosomal mapping of antimicrobial resistance genes in Salmonella enterica serotype Typhimurium, Appl. Environ. Microbiol. 66 (2000) 4842-4848 [CrossRef] [PubMed].
  11. Damiani G., Telecco S., Comincini S., Sironi M., Carretto E., Marone P., Comparison of an improved RAPD fingerprinting with different typing methods for discriminating clinical isolates of Staphylococcus spp., Eur. J. Epidemiol. 12 (1996) 163-169 [CrossRef] [PubMed].
  12. DelVecchio V.G., Rose S., Shaw J.J., Rapid detection of enterococci and antibiotic resistance genes in urine: Approaching real-time capability, Clin. Microbiol. Newsl. 20 (1998) 192-195 [CrossRef].
  13. Dingle K.E., Colles F.M., Wareing D.R.A., Ure R., Fox A.J., Bolton F.E., Bootsma H.J., Willems R.J.L., Urwin R., Maiden M.C.J., Multilocus sequence typing system for Campylobacter jejuni, J. Clin. Microbiol. 39 (2001) 14-23 [CrossRef] [PubMed].
  14. Endtz H.P., van den Braak N., Verburg H.A., van Belkum A., Vancomycin resistance: Status quo and quo vadis, Eur. J. Clin. Microbiol. Infect. Dis. 18 (1999) 683-690 [CrossRef] [PubMed].
  15. Enright M.C., Spratt B.G., A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease, Microbiology 144 (1998) 3049-3060 [PubMed].
  16. Enright M.C., Day N.P.J., Davies C.E., Peacock S.J., Sprat B.G., Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus, J. Clin. Microbiol. 38 (2000) 1008-1015 [PubMed].
  17. Enright M.C., Knox K., Griffiths D., Crook D.W.M., Spratt B.G., Molecular typing of bacteria directly from cerebrospinal fluid, Eur. J. Clin. Microbiol. Infect. Dis. 19 (2000) 627-630 [CrossRef] [PubMed].
  18. Fox G.E., Wisotzkey J.D., Jurtshuk P. Jr., How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity, Int. J. Syst. Bacteriol. 42 (1992) 166-170 [PubMed].
  19. Fraser C.M., Eisen J.A., Salzberg S.L., Microbial genome sequencing, Nature 406 (2000) 799-803 [CrossRef] [PubMed].
  20. Gingeras T.R., Ghandour G., Wang E., Berno A., Small P.M., Drobniewski F., Alland D., Desmond E., Holodniy M., Drenkow J., Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays, Genome Res. 8 (1998) 435-448 [PubMed].
  21. Giraud E., Brisabois A., Martel J.L., Chaslus-Dancla E., Comparative studies of mutations in animal isolates and experimental in vitro- and in vivo-selected mutants of Salmonella spp. suggest a counterselection of highly fluoroquinolone-resistant strains in the field, Antimicrob. Agents Chemother. 43 (1999) 2131-2137 [PubMed].
  22. Goebel B.M., Stackebrandt E., Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments, Appl. Environ. Microbiol. 60 (1994) 1614-1621 [PubMed].
  23. Haaheim H., Dahl K.H., Simonsen G.S., Olsvik O., Sundsfjord A., Long PCR of transposons in the structural analysis of genes encoding acquired glycopeptide resistance in enterococci, Biotechniques 24 (1998) 432-437 [PubMed].
  24. Heinemann J.A., How antibiotics cause antibiotic resistance, Drug Discov. Today 4 (1999) 72-79 [CrossRef] [PubMed].
  25. Heisig P., High-level fluoroquinolone resistance in a Salmonella typhimurium isolate due to alterations in both gyrA and gyrB genes, J. Antimicrob. Chemother. 32 (1993) 367-377 [CrossRef] [PubMed].
  26. Heisig P., Genetic evidence for a role of parC mutations in development of high-level fluoroquinolone resistance in Escherichia coli, J. Antimicrob. Chemother. 40 (1996) 879-885.
  27. Hookey J.V., Edwards V., Patel S., Richardson J.F., Cookson B.D., Use of fluorescent amplified fragment length polymorphism (fAFLP) to characterise methicillin-resistant Staphylococcus aureus, J. Microbiol. Methods 37 (1999) 7-15 [CrossRef] [PubMed].
  28. Janssen P., Coopman R., Huys G., Swings J., Bleeker M., Vos P., Zabeau M., Kersters K., Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy, Microbiology 142 (1996) 1881-1893 [PubMed].
  29. Kamerbeek J., Schouls L., Kolk A., vanAgterveld M., vanSoolingen D., Kuijper S., Bunschoten A., Molhuizen H., Shaw R., Goyal M., vanEmbden J.J., Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology, Clin. Microbiol. 35 (1997) 907-914.
  30. Keyes K., Hudson C., Maurer J.J., Thayer S., White D.G., Lee M.D., Detection of florfenicol resistance genes in Escherichia coli isolated from sick chickens, Antimicrob. Agents Chemother. 44 (2000) 421-424 [CrossRef] [PubMed].
  31. Kostman J.R., Edlind T.D., LiPuma J.J., Stull T.L., Molecular epidemiology of Pseudomonas cepacia determined by polymerase chain reaction ribotyping, J. Clin. Microbiol. 30 (1992) 2084-2087 [PubMed].
  32. Latini L., Ronchetti M.P., Merolla M., Gugleilmi F., Bajaksouzian S., Villa M.P., Jacobs M.R., Ronchetti R., Prevalence of mefE, erm and tet(M) genes in Streptococcus pneumoniae strains from central Italy, Int. J. Antimicrob. Agents 13 (1999) 29-33 [PubMed].
  33. Leclerc M., Delbes C., Moletta R., Godon J.J., Single strand conformation polymorphism monitoring of 16S rDNA Archaea during start-up of an anaerobic digester, FEMS Microbiol. Ecol. 34 (2001) 213-220 [PubMed].
  34. Llanes C., Kirchgesner V., Plesiat P., Propagation of TEM- and PSE-type b-lactamases among amoxicillin-resistant Salmonella spp. isolated in France, Antimicrob. Agents Chemother. 43 (1999) 2430-2436 [PubMed].
  35. Louws F.J., Rademakers J.L.W., de Bruijn F.J., The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection, and disease diagnosis, Annu. Rev. Phytopathol. 37 (1999) 81-125 [PubMed].
  36. Maeda S., Yoshida H., Ogura K., Kanai F., Shiratori Y., Omata M., Helicobacter pylori specific nested PCR assay for the detection of 23 S rRNA mutation associated with clarithromycin resistance, Gut 43 (1988) 317-321.
  37. Maiden M.C., Bygraves J.A., Feil E., Morelli G., Russell J.E., Urwin R., Zhang Q., Zhou J., Zurth K., Caugant D.A., Feavers I.M., Achtman M., Spratt B.G., Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms, Proc. Natl. Acad. Sci. USA 95 (1998) 3140-3145 [CrossRef] [PubMed].
  38. Martineau F., Picard F.J., Roy P.H., Quellette M., Bergeron M.G., Species-specific and ubiquitous-DNA-based assays for rapid identification of Staphylococcus aureus, J. Clin. Microbiol. 36 (1998) 618-623 [PubMed].
  39. Maslow J., Mullingham M.E., Epidemiologic typing systems, Infect. Control Hosp. Epidemiol. 17 (1996) 595-604 [PubMed].
  40. Maurer J.J., Lee M.D., Lobsinger C., Brown T., Maier M., Thayer S.G., Molecular typing of avian Escherichia coli isolates by random amplification of polymorphic DNA, Avian Dis. 42 (1998) 431-451 [CrossRef] [PubMed].
  41. Mougel C., Teyssier S., d'Angelo C., Groud K., Neyra M., Sidi-Boumedine K., Cloeckaert A., Peloille M., Baucheron S., Chaslus-Dancla E., Jarraud S., Meugnier H., Forey F., Vandenesch F., Lina G., Etienne J., Thioulouse J., Manceau C., Robbe P., Nalin R., Briolay J., Nesme X., Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics, Genet. Sel. Evol. (in press).
  42. Navarro E., Simonet P., Normand P., Bardin R., Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer, Arch. Microbiol. 157 (1992) 107-115 [PubMed].
  43. Nesme X., Vaneechoutte M., Orso S., Hoste B., Swings J., Diversity and genetic relatedness within genera Xanthomonas and Stenotrophomonas using restriction endonuclease site differences of PCR-amplified 16S rRNA gene, Syst. Appl. Microbiol. 18 (1995) 127-135.
  44. Noppe-Leclercq I., Wallet F., Haentjes S., Courcol R., Simonet M., PCR detection of aminoglycoside resistance genes: A rapid molecular typing method for Acinetobacter baumannii, Res. Microbiol. 150 (1999) 317-322 [CrossRef] [PubMed].
  45. Oger P., Dessaux Y., Petit A., Gardan L., Manceau C., Chomel C., Nesme X., Validity sensitivity, and resolution limit of PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations, Genet. Sel. Evol. 30 (1998) (Suppl. 1) S311-S332.
  46. Olsen J.E., Skov M., Genomic lineage of Salmonella enterica serovar Dublin, Vet. Microbiol. 40 (1994) 271-282 [CrossRef] [PubMed].
  47. Olsen J.E., Skov M.N., Threlfall E.J., Brown D.J., Clonal lines of Salmonella enterica serotype Enteritidis documented by IS200-, ribo-, pulsed-field gel electrophoresis and RFLP typing, J. Med. Microbiol. 40 (1994) 15-22 [PubMed].
  48. Pastinen T.A., Kurg A., Metspalu A., Peltonen L., Syvänen A.C., Minisequencing: a specific tool for DNA analysis and diagnostics on oligonucleotide arrays, Genome Res. 7 (1997) 606-614 [PubMed].
  49. Petrich A.K., Luinstra K.E., Groves D., Chernesky M.A., Mahony J.B., Direct detection of vanA and vanB genes in clinical specimens for rapid identification of vancomycine resistant enterococci (VRE) using multiplex PCR, Mol. Cell. Probes 13 (1999) 275-281 [CrossRef] [PubMed].
  50. Piatek A.S., Tyagi S., Pol A.C., Telenti A., Miller L.P., Kramer F.R., Alland D., Molecular beacon sequence analysis for detecting drug resistance in Mycobacterium tuberculosis, Nat. Biotechnol. 16 (1998) 359-363 [CrossRef] [PubMed].
  51. Poulsen R.L., Pallesen L.V., Frimodt M.N., Espersen F., Detection of clinical vancomycin-resistant enterococci in Denmark by multiplex PCR and sandwich hybridization, APMIS 107 (1999) 404-412 [PubMed].
  52. Ranjard L., Brothier E., Nazaret S., Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking, Appl. Environ. Microbiol. 66 (2000) 5334-5339 [CrossRef] [PubMed].
  53. Reischl U., Linde H.J., Metz M., Leppmeier B., Lehn N., Rapid identification of Methicillin-resistant Staphylococcus aureus and simultaneous species confirmation using real-time fluorescence PCR, J. Clin. Microbiol. 38 (2000) 2429-2433 [PubMed].
  54. Ridley A., Threlfall E.J., Molecular epidemiology of antibiotic resistance genes in multiresistant epidemic Salmonella typhimurium DT104, Microb. Drug Resist. 4 (1998) 113-118 [PubMed].
  55. Riffard S., Lo Presti F., Vandenesch F., Forey F., Reyrolle M., Etienne J., Comparative analysis of infrequent-restriction-site PCR and pulsed-field gel electrophoresis for epidemiological typing of Legionella pneumophila serogroup 1 strains, J. Clin. Microbiol. 36 (1998) 161-167 [PubMed].
  56. Rudi K., Skulberg O.M., Skulberg R., Jakobsen K.S., Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of cyanobacterial abundance and diversity by array hybridization, Appl. Environ. Microbiol. 66 (2000) 4004-4011 [CrossRef] [PubMed].
  57. Savelkoul P.H.M., Aarts H.J.M., de Haas J., Dijkshoorn L., Duim B., Otsen M., Rademakers J.L.W., Schouls L., Lenstra J.A., Amplified length polymorphism analysis: the state of an art, J. Clin. Microbiol. 37 (1999) 3083-3091 [PubMed].
  58. Schwarz S., Chaslus-Dancla E., Use of antimicrobials in veterinary medicine and mechanisms of resistance, Vet Res. 32 (2001) 201-225 [CrossRef] [PubMed] [EDP Sciences].
  59. Shortridge V.D., Doern G.V., Brueggemann A.B., Beyer J.M., Flamm R.K., Prevalence of macrolide resistance mechanisms in Streptococcus pneumoniae isolates from a multicenter antibiotic resistance surveillance study conducted in the United States in 1994-1995, Clin. Infect. Dis. 29 (1999) 1186-1188 [CrossRef] [PubMed].
  60. Streulens M.J., Molecular epidemiologic typing systems of bacterial pathogens: Current issues and perspectives, Memórias do Instituto Oswaldo Cruz, Rio de Janeiro 93 (1998) 581-585.
  61. Sunde M., Fossum K., Solberg A., Sorum H., Antibiotic resistance in Escherichia coli of the normal intestinal flora of swine, Microb. Drug Resist. 4 (1998) 289-299 [PubMed].
  62. Suzuki Y., Katsukawa C., Tamaru A., Abe C., Makino M., Mizuguchi Y., Taniguchi H., Detection of kanmycin-resistant Mycobacterium tuberculosis by identifying mutations in the 16S rRNA gene, J. Clin. Microbiol. 36 (1988) 1220-1225.
  63. Tenover F.C, Arbeit R.D., Goering R.V., Mickelsen P.A., Murray B.E., Persing D.H., Swaminathan B., Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial typing, J. Clin. Microbiol. 33 (1995) 2233-2239 [PubMed].
  64. Tõnisson N., Kurg A., Lõhmussaar E., Metspalu A., Arrayed primer extension on DNA chip: Method and Applications, in: Shina M. (Ed.), Microarray biochip technology, Natick, USA, 2000, pp. 247-263.
  65. Troesch A., Nguyen H., Miyada C.G., Desvarenne S., Gingeras T.R., Kaplan P.M., Cros P., Mabilat C., Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays, J. Clin. Microbiol. 37 (1999) 49-55 [PubMed].
  66. Tyagi S., Kramer F.R., Molecular beacons: Probes that fluoresce upon hybridization, Nat. Biotechnol. 14 (1996) 303-308 [CrossRef] [PubMed].
  67. Tyler K.D., Wang G., Tyler S.D., Johnson W.M., Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens, J. Clin. Microbiol. 35 (1997) 339-346 [PubMed].
  68. van Belkum A., Kluytmans J., van Leeuwen W., Bax R., Quint W., Peters E., Fluit A., Vandenbroucke-Grauls C., van den Brule A., Koeleman H., Multicenter evaluation of arbitrarily primed PCR for typing of Staphylococcus aureus strains, J. Clin. Microbiol. 33 (1995) 1537-1547 [PubMed].
  69. van Embden J.D,, Cave M.D., Crawford J.T., Dale J.W., Eisenach K.D., Gicquel B., Hermans P., Martin C., McAdam R., Shinnick T.M., Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology, J. Clin. Microbiol. 31 (1993) 406-409 [PubMed].
  70. Van Leeuwen W., Sijmons M., Sluijs J., Verbrugh H., van Belkum A., On the nature and use of randomly amplified DNA from Staphylococcus aureus, J. Clin. Microbiol. 34 (1996) 2770-2777 [PubMed].
  71. Versalovic J., Koeuth T., Lupski R., Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes, Nucleic Acids Res. 19 (1991) 6823-6831 [CrossRef] [PubMed].
  72. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., Zabeau M., Nucleic Acids Res. 23 (1995) 4407-4414 [CrossRef] [PubMed].
  73. Willems R.J., Top J., van den Braak N., van Belkum A., Mevius D.J., Hendriks G., van Santen-Verheuvel M., Embden J.D.A., Molecular diversity and evolutionary relationships of Tn1546-like elements in Enterococci from humans and animals, Antimicrob. Agents Chemother. 43 (1999) 483-491 [PubMed].
  74. Wust J., Frei R., Gunthard H., Altwegg M., Analysis of restriction fragment length polymorphism and ribotyping of multiresistant Stenotrophomonas maltophilia isolated from persisting lung infection in a cystic fibrosis patient, Scand. J. Infect. Dis. 27 (1995) 499-502 [PubMed].
  75. Yakubu D.E., Abadi F.J.R., Pennington T.H., Molecular typing methods for Neisseria meningitidis, J. Med. Microbiol. 48 (1999) 1055-1064 [PubMed].
  76. Zirnstein G., Li Y., Swaminathan B., Angulo F., Ciprofloxacin resistance in Campylobacter jejuni isolates: Detection of gyrA resistance mutations by mismatch amplification mutation assay PCR and DNA sequence analysis, J. Clin. Microbiol. 37 (1999) 3276-3280 [PubMed].
  77. Zirnstein G., Helsel L., Li Y., Swaminathan B., Besser., Characterization of gyrA mutations associated with fluoroquinolone resistance in Campylobacter coli by DNA sequence analysis and MAMA PCR, FEMS Microbiol. Lett. 190 (2000) 1-7 [PubMed].