Free Access
Vet. Res.
Volume 39, Number 1, January-February 2008
Number of page(s) 22
Published online 26 October 2007
How to cite this article Vet. Res. (2008) 39:04
References of  Vet. Res. (2008) 39:04
  1. Afonso C.L., Piccone M.E., Zaffuto K.M., Neilan J., Kutish G.F., Lu Z., Balinsky C.A., Gibb T.R., Bean T.J., Zsak B.L., Rock D.L., African swine fever virus multigene family 360 and 530 genes affect host interferon response, J. Virol. (2004) 78:1858-1864 [CrossRef] [PubMed].
  2. Ahn S., Walt D.R., Detection of Salmonella spp. using microsphere-based, fiber optic DNA microarrays, Anal. Chem. (2005) 77:5041-5047 [CrossRef] [PubMed].
  3. Aho A.D., McNulty A.M., Coussens P.M., Enhanced expression of interleukin-1 alpha and tumor necrosis factor-associated protein 1 in ileal tissues of cattle infected with Mycobacterium avium subsp. paratuberculosis, Infect. Immun. (2003) 71:6479-6486 [CrossRef] [PubMed].
  4. Al-Khaldi S.F., Myers K.M., Rasooly A., Chizhikov V., Genotyping of Clostridium perfringens toxins using multiple oligonucleotide microarray hybridization, Mol. Cell. Probes (2004) 18:359-367 [CrossRef] [PubMed].
  5. Amano M., Ohkusu K., Kusaba K., Ikeda H., Nagasawa Z., Aoki Y., Kawamura Y., Kobatake S., Tanaka T., Matsuura S., Ezaki T., Quantitative microarray-based DNA-DNA hybridization assay for measuring genetic distances among bacterial species and its application to the identification of family Enterobacteriaceae, Microbiol. Immunol. (2005) 49:255-263 [PubMed].
  6. Anjum M.F., Marooney C., Fookes M., Baker S., Dougan G., Ivens A., Woodward M.J., Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray, Infect. Immun. (2005) 73:7894-7905 [CrossRef] [PubMed].
  7. Bae J.W., Rhee S.K., Nam Y.D., Park Y.H., Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes, Nucleic Acids Res. (2005) 33:e113.
  8. Band M.R., Olmstead C., Everts R.E., Liu Z.L., Lewin H.A., A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain, Anim. Biotechnol. (2002) 13:163-172 [CrossRef] [PubMed].
  9. Bauersachs S., Blum H., Mallok S., Wenigerkind H., Rief S., Prelle K., Wolf E., Regulation of ipsilateral and contralateral bovine oviduct epithelial cell function in the postovulation period: a transcriptomics approach, Biol. Reprod. (2003) 68:1170-1177 [CrossRef] [PubMed].
  10. Baxi M.K., Baxi S., Clavijo A., Burton K.M., Deregt D., Microarray-based detection and typing of foot-and-mouth disease virus, Vet. J. (2006) 172:473-481 [CrossRef] [PubMed].
  11. Behr M.A., Wilson M.A., Gill W.P., Salamon H., Schoolink G.K., Rane S., Small P.M., Comparative genomics of BCG vaccines by whole-genome DNA microarray, Science (1999) 284:1520-1523 [CrossRef] [PubMed].
  12. Bekal S., Brousseau R., Masson L., Prefontaine G., Fairbrother J., Harel J., Rapid identification of Escherichia coli pathotypes by virulence gene detection with DNA microarrays, J. Clin. Microbiol. (2003) 41:2113-2125 [CrossRef] [PubMed].
  13. Bergman N.H., Passalacqua K.D., Gaspard R., Shetron-Rama L.M., Quackenbush J., Hanna P.C., Murine macrophage transcriptional responses to Bacillus anthracis infection and intoxication, Infect. Immun. (2005) 73:1069-1080 [CrossRef] [PubMed].
  14. Boyce J.D., Wilkie I., Harper M., Paustian M.L., Kapur V., Genomic scale analysis of Pasteurella multocida gene expression during growth within the natural chicken host, Infect. Immun. (2002) 70:6871-6879 [CrossRef] [PubMed].
  15. Boyd E.F., Porwollik S., Blackmer F., McClelland M., Differences in gene content among Salmonella enterica serovar Typhi isolates, J. Clin. Microbiol. (2003) 41:3823-3828 [CrossRef] [PubMed].
  16. Bryant P.A., Venter D., Robbins-Browne R., Curtis N., Chips with everything: DNA microarrays in infectious diseases, Lancet Infect. Dis. (2004) 4:100-111 [CrossRef] [PubMed].
  17. Burton J.L., Madsen S.A., Yao J., Sipkovsky S.S., Coussens P.M., An immunogenomics approach to understanding periparturient immunosuppression and mastitis susceptibility in dairy cows, Acta Vet. Scand. (2001) 42:407-424 [PubMed].
  18. Burton J.E., Oshota J., North E., Hudson M.J., Polyanskaya N., Brehm J., Lloyd G., Silman N.J., Development of a multipathogen oligonucleotide microarray for detection of Bacillus anthracis, Mol. Cell. Probes (2005) 19:349-357 [CrossRef] [PubMed].
  19. Cai H.Y., Lu L., Muckle C.A., Prescott J.F., Chen S., Development of a novel protein microarray method for serotyping Salmonella enterica strains, J. Clin. Microbiol. (2005) 43:3427-3430 [CrossRef] [PubMed].
  20. Call D.R., Bakko M.K., Krug M.J., Roberts M.C., Identifying antimicrobial resistance genes with DNA microarrays, Antimicrob. Agents Chemother. (2003) 47:3290-3295 [CrossRef] [PubMed].
  21. Call D.R., Brockman F.J., Chandler D.P., Detecting and genotyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays, Int. J. Food Microbiol. (2001) 67:71-80 [CrossRef] [PubMed].
  22. Call D.R., Kang M.S., Daniels J., Besser T.E., Assessing genetic diversity in plasmids from Escherichia coli and Salmonella enterica using a mixed-plasmid microarray, J. Appl. Microbiol. (2006) 100:15-28 [CrossRef] [PubMed].
  23. Call D.R., Challenges and opportunities for pathogen detection using DNA microarrays, Crit. Rev. Microbiol. (2005) 31:91-99 [CrossRef] [PubMed].
  24. Chan K., Baker S., Kim C.C., Detweiler C.S., Dougan G., Falkow S., Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar Typhimurium DNA microarray, J. Bacteriol. (2003) 185:553-563 [CrossRef] [PubMed].
  25. Chan K., Kim C.C., Falkow S., Microarray-based detection of Salmonella enterica serovar Typhimurium transposon mutants that cannot survive in macrophage and mice, Infect. Immun. (2005) 73:5438-5449 [CrossRef] [PubMed].
  26. Chizhikov V., Rasooly A., Chumakov K., Levy D.D., Microarray analysis of microbial virulence factors, Appl. Environ. Microbiol. (2001) 67:3258-3263 [CrossRef] [PubMed].
  27. Clements M.O., Eriksson S., Thompson A., Lucchini S., Hinton J.C.D., Normark S., Rhen M., Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica, Proc. Natl. Acad. Sci. USA (2002) 99:8784-8789 [CrossRef] [PubMed].
  28. Coussens P.M., Pudrith C.B., Skovgaard K., Ren X., Suchyta S.P., Stabel J.R., Heegaard P.M.H., Johne's disease in cattle is associated with enhanced expression of genes encoding IL-5, GATA-3, tissue inhibitors of matrix metalloproteinase 1 and 2, and factors promoting apoptosis in peripheral blood mononuclear cells, Vet. Immunol. Immunopathol. (2005) 105:221-234 [CrossRef] [PubMed].
  29. Cummings C.A., Brinig M.M., Lepp P.W., van de Pas S., Relman D.A., Bordetella species are distinguished by patterns of substantial gene loss and host adaptation, J. Bacteriol. (2004) 186:1484-1492 [CrossRef] [PubMed].
  30. Cummings C.A., Relman D.A., Using DNA microarrays to study host-microbe interactions, Emerg. Infect. Dis. (2000) 6:513-525 [PubMed].
  31. Dahan S., Knutton S., Shaw R.K., Crepin V.F., Dougan G., Frankel G., Transcriptome of enterohemorrhagic Escherichia coli O157 adhereing to eukaryotic plasma membranes, Infect. Immun. (2004) 72:5452-5459 [CrossRef] [PubMed].
  32. Dar A., Munir S., Vishwanathan S., Manuja A., Griebel P., Tikko S., Townsend H., Potter A., Kapur V., Babiuk L.A., Transcriptional analysis of avian embryonic tissues following infection with avian infectious bronchitis virus, Virus Res. (2005) 110:41-55 [CrossRef] [PubMed].
  33. Debouck C., Goodfellow P.N., DNA microarrays in drug discovery and development, Nat. Genet. (1999) 21:48-50 [CrossRef] [PubMed].
  34. De Keersmaecker S.C., Marchal K., Verhoeven T.L., Engelen K., Vanderleyden J., Detweiler C.S., Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including HilA itself, J. Bacteriol. (2005) 187:4381-4391 [CrossRef] [PubMed].
  35. Detweiler C.S., Cunanan D.B., Falkow S., Host microarray analysis reveals a role for the Salmonella response regulator phoP in human macrophage cell death, Proc. Natl. Acad. Sci. USA (2001) 8:5850-5855 [CrossRef].
  36. Diaz R., Siddiqi N., Rubin E.J., Detecting genetic variability among different Mycobacterium tuberculosis strains using DNA microarray technology, Tuberculosis (2006) 86:314-318 [CrossRef].
  37. Dowd S.E., Ishizaki H., Microarray based comparison of two Escherichia coli O157:H7 lineages, BMC Microbiol. (2006) 15:30 [CrossRef].
  38. Eskra L., Mathison A., Splitter G., Microarray analysis of mRNA levels from RAW264.7 macrophages infected with Brucella abortus, Infect. Immun. (2003) 71:1125-1133.
  39. Fadl A.A., Galindo C.L., Sha J., Klimpel G.R., Popov V.L., Chopra A.K., Global gene expression of a murein (Braun) lipoprotein mutant of Salmonella enterica Typhimurium by microarray analysis, Gene (2006) 374:121-127 [CrossRef] [PubMed].
  40. Faucher S.P., Porwollik S., Dozois C.M., McClelland M., Daigle F., Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through selective capture of transcribed sequences, Proc. Natl. Acad. Sci. USA (2006) 103:1906-1911 [CrossRef] [PubMed].
  41. Fitzgerald J.R., Sturdevant D.E., Mackie S.M., Gill S.R., Musser J.M., Evolutionary genomics of Staphylococcus aureus: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic, Proc. Natl. Acad. Sci. USA (2001) 98:8821-8826 [CrossRef] [PubMed].
  42. Frye J.G., Jesse T., Long F., Rondeau G., Porwollik S., McClelland M., Jackson C.R., Englen M., Fedorka-Cray P.J., DNA microarray detection of antimicrobial resistance genes in diverse bacteria, Int. J. Antimicrob. Agents (2006) 27:138-151 [CrossRef] [PubMed].
  43. Fu L.M., Exploring drug action on Mycobacterium tuberculosis using affymetrix oligonucleotide genechips, Tuberculosis (2006) 86:134-143 [CrossRef].
  44. Garaizar J., Porwollik S., Echeita A., Rementeria A., Herrera S., Wong R.M., Frye J., Usera M.A., McClelland M., DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar, J. Clin. Microbiol. (2002) 40:2074-2078 [CrossRef] [PubMed].
  45. Garrido P., Blanco M., Moreno-Paz M., Briones C., Dahbi G., Blanco J., Blanco J., Parro V., STEC-EPEC oligonucleotide microarray: a new tool for typing genetic variants of the LEE pathogenicity island of human and animal Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) strains, Clin. Chem. (2006) 52:192-201 [CrossRef] [PubMed].
  46. Goldschmidt M.C., The use of biosensor and microarray techniques in the rapid detection and identification of Salmonellae, J. AOAC Int. (2006) 89:530-537 [PubMed].
  47. Hammamieh R., Bi S., Mani S., Charaborty N., Mendis C., Das R., Jett M., Genetic variations in peripheral blood mononuclear cells in piglets used as an animal model for staphylococcal enterotoxin exposures, OMICS (2003) 7:401-409 [CrossRef] [PubMed].
  48. Hsu K.L., Pilobello K.T., Mahal L.K., Analyzing the dynamic bacterial glycome with a lectin microarray approach, Nat. Chem. Biol. (2006) 2:153-157 [CrossRef] [PubMed].
  49. Huang Q., Liu D., Majewski P., Schulte L.C., Korn J.M., Young R.A., Lander E.S., Hacohen N., The plasticity of dendritic cell responses to pathogens and their components, Science (2001) 294:870-875 [CrossRef] [PubMed].
  50. Kakinuma K., Fukushima M., Kawaguchi R., Detection and identification of Escherichia coli, Shigella, and Salmonella by microarrays using the gyrB gene, Biotechnol. Bioeng. (2003) 83:721-728 [CrossRef] [PubMed].
  51. Karaca G., Anobile J., Downs D., Burnside J., Schmidt C.J., Herpesvirus of turkeys: microarray analysis of host gene response to infection, Virology (2004) 318:102-111 [CrossRef] [PubMed].
  52. Kato-Maeda M., Gao Q., Small P.M., Microarray analysis of pathogens and their interaction with hosts, Cell. Microbiol. (2001) 3:713-719 [CrossRef] [PubMed].
  53. Keramas G., Perozziello G., Geschke O., Christensen C.B., Development of a multiplex microarray microsystem, Lab Chip (2004) 4:152-158 [CrossRef] [PubMed].
  54. Klener P., Szynal M., Cleuter Y., Merimi M., Duvillier H., Lallemand F., Bagnis C., Griebel P., Sotiriou C., Burny A., Martiat P., van den Broeke A., Insights into gene expression changes impacting B-cell transformation: cross-species microarray analysis of bovine leukemia virus tax-responsive genes in ovine B cells, J. Virol. (2006) 80:1922-1938 [CrossRef] [PubMed].
  55. Konig R., Schramm G., Oswald M., Seitz H., Sager S., Zapatka M., Reinelt G., Eils R., Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms, BMC Bioinformatics (2006) 8:119 [CrossRef].
  56. Korczak B., Frey J., Schrenzel J., Pluschke G., Pfister R., Ehricht R., Kuhnert P., Use of diagnostic microarrays for determination of virulence gene patterns of Escherichia coli K1, a major cause of neonatal meningitis, J. Clin. Microbiol. (2005) 43:1024-1031 [CrossRef] [PubMed].
  57. Kostic T., Weilharter A., Sessitsch A., Bodrossy L., High-sensitivity, polymerase chain reaction-free detection of microorganisms and their functional genes using 70-mer oligonucleotide diagnostic microarray, Anal. Biochem. (2005) 346:333-335 [CrossRef] [PubMed].
  58. Kostrzynska M., Bachand A., Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens, Can. J. Microbiol. (2006) 52:1-8 [CrossRef] [PubMed].
  59. Lawhon S.D., Frye J.G., Suyemoto M., Porwollik S., McClelland M., Altier C., Global regulation by CsrA in Salmonella typhimurium, Mol. Microbiol. (2003) 48:1633-1645.
  60. Lawley T.D., Chan K., Thompson L.J., Kim C.C., Govoni G.R., Monack D.M., Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse, PLoS Pathog. (2006) 2(2):e11.
  61. Lee L.J., Barrett J.A., Poole R.K., Genome-wide transcriptional response of chemostat-cultured Escherichia coli to zinc, J. Bacteriol. (2005) 187:1124-1134 [CrossRef] [PubMed].
  62. Lin Baochuan L., Wang Z., Vora G.J., Thornton J.A., Schnur J.M., Thach D.C., Blaney K.M., Ligler A.G., Malanoski A.P., Santiago J., Walter E.A., Agan B.K., Metzgar D., Seto D., Daum L.T., Kruzelock R., Rowley R.K., Hanson E.H., Tibbetts C., Stenger D.A., Broad-spectrum respiratory tract pathogen identification using resequencng DNA microarrays, Genome Res. (2006) 16:527-535 [CrossRef] [PubMed].
  63. Liu Y.C., Huang G.S., Wu M.C., Hong M.Y., Hsiung K.P., Detection of foot and mouth disease and porcine reproductive and respiratory syndrome viral genes using microarray chip, Vet. Res. Commun. (2006) 30:191-204 [CrossRef] [PubMed].
  64. MacInnes J.I., Lally E.T., The genus Actinobacillus, in: Dworkin W. et al. (Eds.), The Prokaryotes: An evolving electronic resource for the microbiological community, 3rd ed., Springer-Verlag, New York, 2004.
  65. Madsen M.L., Nettleton D., Thacker E.L., Edwards R., Minion F.C., Transcriptional profiling of Mycoplasma hyopneumoniae during heat shock using microarrays, Infect. Immun. (2006) 74:160-166 [CrossRef] [PubMed].
  66. Malone A.S., Chung Y.K., Yousef A.E., Genes of Escherichia coli O157:H7 that are involved in high-pressure resistance, Appl. Environ. Microbiol. (2006) 72:2661-2671 [CrossRef] [PubMed].
  67. Marsh I.B., Bannantine J.P., Paustian M.L., Tizard M.L., Kapur V., Whittington R.J., Genomic comparison of Mycobacterium avium subsp. paratuberculosis sheep and cattle strains by microarray hybridization, J. Bacteriol. (2006) 188:2290-2293 [CrossRef] [PubMed].
  68. Melnikow E., Dornan S., Sargent C., Dusko M., Evans G., Gunkel N., Selzer P.M., Ullrich H.J., Microarray analysis of Haemophilus parasuis gene expression under in vitro growth conditions mimicking the in vivo environment, Vet. Microbiol. (2005) 110:255-263 [CrossRef] [PubMed].
  69. Morales C.A., Porwollik S., Frye J.G., Kinde H., McClelland M., Guard-Bouldin J., Correlation of phenotype with the genotype of egg-contaminating Salmonella enterica serovar enteritidis, Appl. Environ. Microbiol. (2005) 71:4388-4399 [CrossRef] [PubMed].
  70. Moser R.J., Reverter A., Kerr C.A., Beh K.J., Lehnert S.A., A mixed-model approach for the analysis of cDNA microarray gene expression data from extreme-performing pigs after infection with Actinobacillus pleuropneumoniae, J. Anim. Sci. (2004) 82:1261-1271.
  71. Munir S., Kapur V., Transcriptional analysis of the response of poultry species to respiratory pathogens, Poult. Sci. (2003) 82:885-892 [PubMed].
  72. Munir S., Sharma J.M., Kapur V., Transcriptional response of avian cells to infection with Newcastle disease virus, Virus Res. (2005) 107:103-108 [CrossRef] [PubMed].
  73. Nagino K., Nomura O., Takii Y., Myomoto A., Ichikawa M., Nakamura F., Higasa M., Akiyama H., Nobumasa H., Shiojima S., Tsujimoto G., Ultrasensitive DNA chip: Gene expression profile analysis without RNA amplification, J. Biochem. (2006) 139:697-703 [CrossRef] [PubMed].
  74. Oshima T., Wada C., Kawagoe Y., Ara T., Maeda M., Masuda Y., Hiraga S., Mori H., Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli, Mol. Microbiol. (2002) 45:673-695 [CrossRef] [PubMed].
  75. Overton T.W., Griffiths L., Patel M.D., Hobman J.L., Penn C.W., Cole J.A., Constantinidou C., Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL, and NarP during anaerobic growth of Escherichia coli: new insights into microbial physiology, Biochem. Soc. Trans. (2006) 34:104-107 [CrossRef] [PubMed].
  76. Pareek R., Wellntiz O., van Dorp R., Burton J., Kerr D., Immunorelevant gene expression in LPS-challenged bovine mammary epithelial cells, J. Appl. Genet. (2005) 46:171-177 [PubMed].
  77. Patel D., Danelishvili L., Yamazaki Y., Alonso M., Paustian M.L., Bannantine J.P., Meunier-Goddik L., Bermudez L.E., The ability of Mycobacterium avium subsp. paratuberculosis to enter bovine epithelial cells is influenced by preexposure to a hyperosmolar environment and intracellular passage in bovine mammary epithelial cells, Infect. Immun. (2006) 74:2849-2855 [CrossRef] [PubMed].
  78. Paustian M.L., May B.J., Kapur V., Pasteurella multocida gene expression in response to iron limitation, Infect. Immun. (2001) 69:4109-4115 [CrossRef] [PubMed].
  79. Pelludat C., Prager R., Tschape H., Rabsch W., Schuchhardt J., Hardt W.D., Pilot study to evaluate microarray hybridization as a tool for Salmonella enterica serovar Typhimurium strain differentiation, J. Clin. Microbiol. (2005) 43:4092-4106 [CrossRef] [PubMed].
  80. Perreten V., Vorlet-Fawer L., Slickers P., Ehricht R., Kuhnert P., Frey J., Microarray-based detection of 90 antibiotic resistance genes of gram-positive bacteria, J. Clin. Microbiol. (2005) 43:2291-2302 [CrossRef] [PubMed].
  81. Porwollik S., Boyd E.F., Choy C., Cheng P., Florea L., Proctor E., McClelland M., Characterization of Salmonella enterica subspecies I genovars by use of microarrays, J. Bacteriol. (2004) 186:5883-5898 [CrossRef] [PubMed].
  82. Porwollik S., Frye J., Florea L.D., Blackmer F., McClelland M., A non-redundant microarray of genes for two related bacteria, Nucleic Acids Res. (2003) 31:1869-1876 [CrossRef] [PubMed].
  83. Porwollik S., Santiviago C.A., Cheng P., Florea L., McClelland M., Differences in gene content between Salmonella enterica serovar Enteritidis isolates and comparison to closely related serovars Gallinarum and Dublin, J. Bacteriol. (2005) 187:6545-6555 [CrossRef] [PubMed].
  84. Porwollik S., Wong R.M., McClelland M., Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis, Proc. Natl. Acad. Sci. USA (2002) 99:8956-8961 [CrossRef] [PubMed].
  85. Rahman M.T., Parreira V., Prescott J.F., In vitro and intra-macrophage gene expression by Rhodococcus equi strain 103, Vet. Microbiol. (2005) 110:131-140 [CrossRef] [PubMed].
  86. Rajashekara G., Glasner J.D., Glover D.A., Splitter G.A., Comparative whole-genome hybridization reveals genomic islands in Brucella species, J. Bacteriol. (2004) 186:5040-5051 [CrossRef] [PubMed].
  87. Reen F.J., Boyd E.F., Porwollik S., Murphy B.P., Gilroy D., Fanning S., McClelland M., Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and Typhimurium strains isolated from milk filters and bovine samples from Ireland, using a Salmonella microarray, Appl. Environ. Microbiol. (2005) 71:1616-1625 [CrossRef] [PubMed].
  88. Revel A.T., Talaat A.M., Norgard M.V., DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete, Proc. Natl. Acad. Sci. USA (2002) 99:1562-1567 [CrossRef] [PubMed].
  89. Rhee S.J., Walker W.A., Cherayil B.J., Developmentally regulated intestinal expression of IFN-gamma and its target genes and the age-specific response to enteric Salmonella infection, J. Immunol. (2005) 15:1127-1136.
  90. Schembri M.A., Ussery D.W., Workman C., Hasman H., Klemm P., DNA microarray analysis of fim mutations in Escherichia coli, Mol. Genet. Genomics (2002) 267:721-729.
  91. Sergeev N., Distler M., Courtney S., Al-Khaldi S.F., Volokhov D., Chizhikov V., Rasooly A., Multipathogen oligonucleotide microarray for environmental and biodefense applications, Biosens. Bioelectron. (2004) 20:684-698 [CrossRef] [PubMed].
  92. Skovgaard K., Grell S.N., Heegaard P.M., Jungersen G., Pudrith C.B., Coussens P.M., Differential expression of genes encoding CD30L and P-selectin in cattle with Johne's disease: progress toward a diagnostic gene expression signature, Vet. Immunol. Immunopathol. (2006) 112:210-224 [CrossRef] [PubMed].
  93. Staudinger B.J., Oberdoerster M.A., Lewis P.J., Rosen H., mRNA expression profiles for Escherichia coli ingested by normal and phagocyte oxidase-deficient human neutrophils, J. Clin. Invest. (2002) 110:1151-1163 [CrossRef] [PubMed].
  94. Suchyta S.P., Sipkovsky S., Halgren R.G., Kruska R., Elftman M., Weber-Nielsen M., Vandehaar M.J., Xiao L., Tempelman R.J., Coussens P.M., Bovine mammary gene expression profiling using cDNA microarray enhanced mammary-specific transcripts, Physiol. Genomics (2003) 161:8-18.
  95. Tani T.H., Khodursky A., Blumenthal R.M., Brown P.O., Matthews R.G., Adaptation to famine: A family of stationary-phase genes revealed by microarray analysis, Proc. Natl. Acad. Sci. USA (2002) 99:13471-13476 [CrossRef] [PubMed].
  96. Thirumalapura N.R., Morton R.J., Ramachandran A., Malayer J.R., Lipopolysaccharide microarrays for the detection of antibodies, J. Immunol. Methods (2005) 298:73-81 [CrossRef] [PubMed].
  97. Tobler N.E., Pfunder M., Herzog K., Frey J.E., Altwegg M., Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray, J. Microbiol. Methods (2005) 66:116-124 [CrossRef] [PubMed].
  98. Tong X., Campbell J.W., Balazsi G., Kay K.A., Wanner B.L., Gerdes S.Y., Oltvai Z.N., Genome-scale identification of conditionally essential genes of E. coli by DNA microarrays, Biochem. Biophys. Res. Commun. (2004) 322:347-354 [CrossRef] [PubMed].
  99. Van Hoek A.H., Scholtens I.M., Cloeckaert A., Aarts H.J., Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis, J. Microbiol. Methods (2005) 62:13-23 [CrossRef] [PubMed].
  100. Van Ijperen C., Kuhnert P., Frey J., Clewley J.P., Virulence typing of Escherichia coli using microarrays, Mol. Cell. Probes (2002) 16:371-378 [CrossRef] [PubMed].
  101. Wang D., Coscoy L., Zylberberg M., Avila P.C., Boushey H.A., Ganem D., DeRisi J.L., Microarray-based detection and genotyping of viral pathogens, Proc. Natl. Acad. Sci. USA (2002) 99:15687-15692 [CrossRef] [PubMed].
  102. Wang D., Urisman A., Liu Y.-T., Springer M., Ksiazek T.G., Erdman D.D., Mardis E.R., Hickenbotham M., Magrini V., Eldred J., Latreille J.P., Wilson R.K., Ganem D., DeRisi J.L., Viral discovery and sequence recovery using DNA microarrays, PLoS Biol. (2003) 1:257-260 [CrossRef].
  103. Wang Q., Frye J.G., McClelland M., Harshey R.M., Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes, Mol. Microbiol. (2004) 52:169-187 [CrossRef] [PubMed].
  104. Weiss D.J., Evanson O.A., Deng M., Abrahamsen M.S., Sequential patterns of gene expression by bovine monocyte-derived macrophages associated with ingestion of mycobacterial organisms, Microb. Pathog. (2004) 37:215-224 [CrossRef] [PubMed].
  105. Werling D., Ruryk A., Heaney J., Moeller E., Brownlie J., Ability to differentiate between cp and ncp BVDV by microarrays: towards an application in clinical veterinary medicine? Vet. Immunol. Immunopathol. (2005) 108:157-164.
  106. Willse A., Straub T.M., Wunschel S.C., Small J.A., Call D.R., Daly D.S., Chandler D.P., Quantitative oligonucleotide microarray fingerprinting of Salmonella enterica isolates, Nucleic Acids Res. (2004) 32:1848-1856 [CrossRef] [PubMed].
  107. Wilson H.L., Aich P., Roche F.M., Jala S., Hodgson P.D., Brinkman F.S.L., Potter A., Babiuk L.A., Griebel P.J., Molecular analyses of disease pathogenesis: application of bovine microarrays, Vet. Immunol. Immunopathol. (2005) 105:227-287.
  108. Wilson W.J., Strout C.L., DeSantis T.Z., Stilwell J.L., Carrano A.V., Andersen G.L., Sequence-specific identification of 18 pathogenic microorganisms using microarray technology, Mol. Cell. Probes (2002) 16:119-127 [CrossRef] [PubMed].
  109. Wu C.F., Valdes J.J., Bentley W.E., Sekowski J.W., DNA microarray for discrimination between pathogenic O157:H7 EDL933 and non-pathogenic Escherichia coli strains, Biosens. Biochem. (2003) 30:1-8 [CrossRef].
  110. Yamazaki V., Sirenko O., Schafer R.J., Nguyen L., Gutsmann T., Brade L., Groves J.T., Cell membrane array fabrication and assay technology, BMC Biotechnol. (2005) 16:18 [CrossRef].
  111. Zimmer D.P., Paliy O., Thomas B., Gyaneshwar P., Kustu S., Genome image programs: Visualization and interpretation of Escherichia coli microarray experiments, Genetics (2004) 167:2111-2119 [CrossRef] [PubMed].