Open Access
Table I.
Comparison of the nucleotide and amino acid sequences of VP8*, VP5* and VP4 of porcine strain 61/07/Ire with those of representatives of established P genotypes. Abbreviations: Si, simian; Eq, equine; Po, porcine; Bo, bovine; Hu, human; Ov, ovine; Ca, caprine; Mu, murine. In boldface the highest identity matches.
| Species/Strain/Accession No/P type | VP4 (nt) | VP8* (aa) | VP5 (aa) | VP4 (aa) |
|---|---|---|---|---|
| Bo/RF/U65924/P[1] | 73.1 | 69.8 | 83.9 | 78.9 |
| Si/SA11/M23188/P[2] | 73.7 | 71.5 | 84.7 | 80 |
| Si/RRV/M18736/P[3] | 72.3 | 71.5 | 83.7 | 79.3 |
| Ca/K9/D14725/P[3] | 73.1 | 69.4 | 85.4 | 79.6 |
| Hu/RV-5/M32559/P[4] | 69.9 | 59.4 | 75.9 | 70.6 |
| Bo/UK/M22306/P[5] | 68.8 | 61.9 | 77.6 | 72.1 |
| Hu/M37/L20877/P[6] | 69.3 | 61 | 79 | 73.1 |
| Po/Gottfried/M33516/P[6] | 68.5 | 60.6 | 77.2 | 72 |
| Po/OSU/X13190/P[7] | 75.1 | 71.9 | 86.6 | 81.5 |
| Hu/Wa/M96825/P[8] | 69.8 | 59.4 | 75.3 | 70.2 |
| Hu/K8/D90260/P[9] | 65.5 | 55.6 | 73.6 | 67.7 |
| Hu/69M/M60600/P[10] | 72.5 | 69.4 | 84.3 | 79.2 |
| Bo/B223/D13394/P[11] | 59.3 | 36.9 | 67.1 | 57.1 |
| Eq/H-2/L04638/P[12] | 71 | 64.8 | 83 | 76.9 |
| Po/A46/AY050274/P[13] | 75.9 | 66.3 | 87.7 | 80.4 |
| Hu/Pa169/D14724/P[14] | 66.3 | 58.1 | 74.4 | 69 |
| Ov/Lp14/L11599/P[15] | 72.3 | 69.8 | 83.3 | 78.8 |
| Mu/EB/L18992/P[16] | 66.5 | 55.2 | 78.6 | 71 |
| Bo/993/83/D16352/P[17] | 62.5 | 41.4 | 70.2 | 60.8 |
| Eq/L338/D13399/P[18] | 72.9 | 67.7 | 82.4 | 77.7 |
| Po/4F/L10359/P[19] | 69.8 | 59.8 | 79.9 | 73.3 |
| Mu/EHP/U08424/P[20] | 69.1 | 67.7 | 81.2 | 76.6 |
| Bo/Hg18/AF237665/P[21] | 72 | 62.3 | 83.3 | 76.4 |
| La/160/01/AF526374/P[22] | nd | 65.1 | nd | nd |
| Po/A34/AY174094/P[23] | nd | 64 | nd | nd |
| Si/TUCH/AY596189/P[24] | 71.5 | 70.2 | 84.7 | 79.7 |
| Hu/Dhaka6/AY773004/P[25] | 66.4 | 56 | 72.7 | 67.1 |
| Po/134/04-15/DQ061053/P[26] | 76.5 | 75.3 | 87.7 | 83.6 |
| Po/344/04-1/DQ242615/P[27] | 69.9 | 61 | 78.6 | 72.8 |
| Hu/Ecu534/EU805773/P[28] | 69.8 | 64 | 81.1 | 75.3 |
| Bo/AzuK/AB454420/P[29] | 64.5 | 47.3 | 70 | 62.3 |
| Ch/Ch-2G3/EU486956/P[30] | 60.9 | 42.6 | 68.9 | 59.9 |
| Ch/Ch-661G1/EU486962/P[31] | 61.9 | 41 | 69.7 | 60.2 |