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Timothy J. Johnson, Sara M. Shepard, Bernadette Rivet, Jessica L. Danzeisen and Alessandra Carattoli
Plasmid 66 (3) 144 (2011)
DOI: 10.1016/j.plasmid.2011.07.003
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Sandra Díaz-Sánchez, Sergio Sánchez, Christa Ewers and Ursula Höfle
Avian Pathology 41 (4) 337 (2012)
DOI: 10.1080/03079457.2012.687101
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Ying Wang, Cheng Tang, Xuehui Yu, Mengyun Xia and Hua Yue
Avian Pathology 39 (4) 297 (2010)
DOI: 10.1080/03079457.2010.495742
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Haitham Ghunaim, Marwan Abdelhamid Abu-Madi and Subhashinie Kariyawasam
Veterinary Microbiology 172 (1-2) 13 (2014)
DOI: 10.1016/j.vetmic.2014.04.019
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F. Silveira, R.P. Maluta, M.R. Tiba, et al.
The Veterinary Journal 217 65 (2016)
DOI: 10.1016/j.tvjl.2016.06.007
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Pathological and Pharmacochemical Evaluation of Broiler Chicken Affected Naturally with Colibacillosis in Kashmir Valley

Basharat Maqbool Wani, Mohammad Maqbool Darzi, Masood Saleem Mir, Sheikh Adil and Irfan Shakeel
International Journal of Pharmacology 13 (4) 388 (2017)
DOI: 10.3923/ijp.2017.388.395
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Virulence and antimicrobial resistance ofKlebsiella pneumoniaeisolated from passerine and psittacine birds

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Avian Pathology 45 (2) 194 (2016)
DOI: 10.1080/03079457.2016.1142066
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Molecular and phenotypic characterisation of Extended Spectrum β-lactamase CTX-M Escherichia coli from farm animals in Great Britain

Monique Toszeghy, Neil Phillips, Hannah Reeves, et al.
Research in Veterinary Science 93 (3) 1142 (2012)
DOI: 10.1016/j.rvsc.2012.05.001
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Characterization of Escherichia coli Isolates from Commercial Layer Hens with Salpingitis

Mahmood Salehi and Reza Ghanbarpou
American Journal of Animal and Veterinary Sciences 5 (3) 208 (2010)
DOI: 10.3844/ajavsp.2010.208.214
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Comparison and phylogenetic analysis of the ISS gene in two predominant avian pathogenic E. coli serogroups isolated from avian colibacillosis in Iran

Taghi Zahraei Salehi, Abdollah Derakhshandeh, Hasan Tadjbakhsh and Vahid Karimi
Research in Veterinary Science 94 (1) 5 (2013)
DOI: 10.1016/j.rvsc.2012.07.010
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Avian Diseases 58 (1) 39 (2014)
DOI: 10.1637/10586-052913-Reg.1
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Microbial Forensics

W. Florian Fricke, Thomas A. Cebula and Jacques Ravel
Microbial Forensics 479 (2011)
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Jessica L. Danzeisen, Yvonne Wannemuehler, Lisa K. Nolan and Timothy J. Johnson
Avian Diseases 57 (1) 104 (2013)
DOI: 10.1637/10218-042812-ResNote.1
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Genetic diversity and features analysis of type VI secretion systems loci in avian pathogenic Escherichia coli by wide genomic scanning

Jiale Ma, Min Sun, Yinli Bao, et al.
Infection, Genetics and Evolution 20 454 (2013)
DOI: 10.1016/j.meegid.2013.09.031
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Virulence factors of avian pathogenic Escherichia coli (APEC)

Gerson Nakazato, Tatiana Amabile de Campos, Eliana Guedes Stehling, Marcelo Brocchi and Wanderley Dias da Silveira
Pesquisa Veterinária Brasileira 29 (7) 479 (2009)
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Escherichia coli from cellulitis lesions in broilers

L. S. S. Barros, R. M. Silva, I. M. Silva, M. D. Baliza and F. F. Virgílio
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DOI: 10.1007/s11694-013-9138-3
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papA Gene of Avian Pathogenic Escherichia coli

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Avian Diseases 55 (4) 532 (2011)
DOI: 10.1637/9663-011911-Reg.1
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TonB is essential for virulence in avian pathogenic Escherichia coli

Karen M. Holden, Glenn F. Browning, Amir H. Noormohammadi, Philip F. Markham and Marc S. Marenda
Comparative Immunology, Microbiology and Infectious Diseases 35 (2) 129 (2012)
DOI: 10.1016/j.cimid.2011.12.004
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Francis Dziva and Mark P. Stevens
Avian Pathology 37 (4) 355 (2008)
DOI: 10.1080/03079450802216652
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Journal of Applied Microbiology 102 (2) (2007)
DOI: 10.1111/j.1365-2672.2006.03076.x
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Avian Diseases 56 (1) 192 (2012)
DOI: 10.1637/9861-072111-Reg.1
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A Longitudinal Study Simultaneously Exploring the Carriage of APEC Virulence Associated Genes and the Molecular Epidemiology of Faecal and Systemic E. coli in Commercial Broiler Chickens

Kirsty Kemmett, Tom Humphrey, Steven Rushton, et al.
PLoS ONE 8 (6) e67749 (2013)
DOI: 10.1371/journal.pone.0067749
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Full Sequence and Comparative Analysis of the Plasmid pAPEC-1 of Avian Pathogenic E. coli χ7122 (O78∶K80∶H9)

Melha Mellata, Jeffrey W. Touchman, Roy Curtiss and Neil Hall
PLoS ONE 4 (1) e4232 (2009)
DOI: 10.1371/journal.pone.0004232
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Gene expression modulation in chicken macrophages exposed to Mycoplasma synoviae or Escherichia coli

Miha Lavrič, Michele N. Maughan, Travis W. Bliss, et al.
Veterinary Microbiology 126 (1-3) 111 (2008)
DOI: 10.1016/j.vetmic.2007.06.011
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Extraintestinal Pathogenic Escherichia coli-Induced Acute Necrotizing Pneumonia in Cats

R. Sura, H. J. Van Kruiningen, C. DebRoy, et al.
Zoonoses and Public Health 54 (8) 307 (2007)
DOI: 10.1111/j.1863-2378.2007.01067.x
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Detection of Iss and Bor on the surface of Escherichia coli

A.M. Lynne, J.A. Skyberg, C.M. Logue and L.K. Nolan
Journal of Applied Microbiology 102 (3) 660 (2007)
DOI: 10.1111/j.1365-2672.2006.03133.x
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Jing Han, Aaron M. Lynne, Donna E. David, Rajesh Nayak and Steven L. Foley
Food Research International 45 (2) 931 (2012)
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Comparative Genomic Analysis Shows That Avian Pathogenic Escherichia coli Isolate IMT5155 (O2:K1:H5; ST Complex 95, ST140) Shares Close Relationship with ST95 APEC O1:K1 and Human ExPEC O18:K1 Strains

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PLoS ONE 9 (11) e112048 (2014)
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Avian Pathology 43 (3) 199 (2014)
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Evaluation of systemic and mucosal immune responses in mice administered with recombinant Salmonella Typhimurium expressing IutA protein

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Korean Journal of Veterinary Research 53 (3) 163 (2013)
DOI: 10.14405/kjvr.2013.53.3.163
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Environmental Microbiology Reports 3 (2) 262 (2011)
DOI: 10.1111/j.1758-2229.2010.00220.x
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Esther-Maria Antão, Susanne Glodde, Ganwu Li, et al.
Microbial Pathogenesis 45 (5-6) 361 (2008)
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DOI: 10.1089/fpd.2014.1934
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Foodborne Pathogens and Disease 12 (1) 74 (2015)
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Foodborne Pathogens and Disease 9 (1) 37 (2012)
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Foodborne Pathogens and Disease 8 (5) 631 (2011)
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Foodborne Pathogens and Disease 6 (6) 657 (2009)
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Foodborne Pathogens and Disease 7 (9) 1099 (2010)
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Foodborne Pathogens and Disease 4 (2) 134 (2007)
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Transboundary and Emerging Diseases 66 (5) 1920 (2019)
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Microorganisms 8 (10) 1595 (2020)
DOI: 10.3390/microorganisms8101595
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Poultry Science 96 (8) 2862 (2017)
DOI: 10.3382/ps/pex088
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Infection and Immunity 79 (1) 279 (2011)
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DOI: 10.1128/IAI.00102-13
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British Poultry Science 59 (4) 396 (2018)
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Brazilian Journal of Microbiology 49 107 (2018)
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Veterinary Microbiology 239 108445 (2019)
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Avian Diseases 50 (2) 273 (2006)
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Virulence Genotyping of Salmonella spp. with Multiplex PCR

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Avian Diseases 50 (1) 77 (2006)
DOI: 10.1637/7417.1
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Occurrence of Pathogenicity Island IAPEC-O1Genes Among Escherichia coli Implicated in Avian Colibacillosis

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Avian Diseases 50 (3) 405 (2006)
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Aaron M. Lynne, Steven L. Foley and Lisa K. Nolan
Avian Diseases 50 (3) 445 (2006)
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F.N. Kassé, J.M. Fairbrother and J. Dubuc
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Diversity and Population Overlap between Avian and Human Escherichia coli Belonging to Sequence Type 95

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mSphere 4 (1) (2019)
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Microbial Genomics 5 (2) (2019)
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BMC Microbiology 18 (1) (2018)
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K. Yaguchi, T. Ogitani, R. Osawa, et al.
Avian Diseases 51 (3) 656 (2007)
DOI: 10.1637/0005-2086(2007)51[656:VFOAPE]2.0.CO;2
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Avian Diseases 51 (3) 771 (2007)
DOI: 10.1637/0005-2086(2007)51[771:COASOT]2.0.CO;2
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Pina M. Fratamico, Chitrita DebRoy and Yanhong Liu
Food Analytical Methods 2 (3) 169 (2009)
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DOI: 10.1111/j.1472-765X.2009.02681.x
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Environmental Microbiology Reports 1 (6) 510 (2009)
DOI: 10.1111/j.1758-2229.2009.00058.x
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O-acetyltransferase geneneuOis segregated according to phylogenetic background and contributes to environmental desiccation resistance inEscherichia coliK1

Ines L. Mordhorst, Heike Claus, Christa Ewers, et al.
Environmental Microbiology 11 (12) 3154 (2009)
DOI: 10.1111/j.1462-2920.2009.02019.x
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Journal of Bacteriology and Virology 38 (4) 179 (2008)
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Phenotypic and genotypic properties of Escherichia coli isolated from colisepticemic cases of Japanese quail

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Tropical Animal Health and Production 42 (7) 1497 (2010)
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Phylogenetic background and virulence genes of Escherichia coli isolates from colisepticemic and healthy broiler chickens in Iran

Reza Ghanbarpour, Masoud Sami, Mahmood Salehi and Mahla Ouromiei
Tropical Animal Health and Production 43 (1) 153 (2011)
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Subhashinie Kariyawasam and Jennifer Han
Food Safety in Poultry Meat Production 261 (2019)
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Catherine M. Logue and Lisa K. Nolan
Safety of Meat and Processed Meat 461 (2009)
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Unique DNA sequences of avian pathogenicEscherichia coliisolates as determined by genomic suppression subtractive hybridization

Subhashinie Kariyawasam, Timothy J. Johnson and Lisa K. Nolan
FEMS Microbiology Letters 262 (2) 193 (2006)
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Highly Pathogenic and Multidrug Resistant Avian Pathogenic Escherichia Coli in Free-Range Chickens from Brazil

ES Oliveira, MV Cardozo, MM Borzi, et al.
Brazilian Journal of Poultry Science 21 (1) (2019)
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Zhihao Wang, Jiakun Zuo, Jiansen Gong, et al.
AMB Express 9 (1) (2019)
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Lisa K. Nolan, Jean‐Pierre Vaillancourt, Nicolle L. Barbieri and Catherine M. Logue
Diseases of Poultry 770 (2020)
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Genomic and Functional Characterization of Poultry Escherichia coli From India Revealed Diverse Extended-Spectrum β-Lactamase-Producing Lineages With Shared Virulence Profiles

Arif Hussain, Sabiha Shaik, Amit Ranjan, et al.
Frontiers in Microbiology 10 (2019)
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Isolation and characterization of E. coli strains causing intramammary infections from dairy animals and wild birds

Karima M Fahim, Elshaimaa Ismael, Hanan S Khalefa, Heba S Farag and Dalia A Hamza
International Journal of Veterinary Science and Medicine 7 (1) 61 (2019)
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Tom Slezak, Jonathan Allen and Crystal Jaing
Microbial Forensics 283 (2020)
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Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis

Kylie E. Rodriguez-Siek, Catherine W. Giddings, Curt Doetkott, et al.
Microbiology 151 (6) 2097 (2005)
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Loop-mediated isothermal amplification: rapid molecular detection of virulence genes associated with avian pathogenic Escherichia coliin poultry

Polona Kogovšek, Jerneja Ambrožič-Avguštin, Alenka Dovč, et al.
Poultry Science 98 (3) 1500 (2019)
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Virulence gene content in Escherichia coli isolates from poultry flocks with clinical signs of colibacillosis in Brazil

Silvia De Carli, Nilo Ikuta, Fernanda Kieling Moreira Lehmann, et al.
Poultry Science 94 (11) 2635 (2015)
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Evolution of colicin BM plasmids: the loss of the colicin B activity gene

Julia K. Christenson and David M. Gordon
Microbiology 155 (5) 1645 (2009)
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Characterization of a yjjQ mutant of avian pathogenic Escherichia coli (APEC)

Ganwu Li, Christa Ewers, Claudia Laturnus, et al.
Microbiology 154 (4) 1082 (2008)
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Differential effects of short-chain fatty acids and iron on expression of iha in Shiga-toxigenic Escherichia coli

Sylvia Herold, James C. Paton, Potjanee Srimanote and Adrienne W. Paton
Microbiology 155 (11) 3554 (2009)
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Diseases of Poultry

Lisa K. Nolan, H. John Barnes, Jean-Pierre Vaillancourt, Tahseen Abdul-Aziz and Catherine M. Logue
Diseases of Poultry 751 (2013)
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Extraintestinal Foodborne Pathogens

Lee W. Riley
Annual Review of Food Science and Technology 11 (1) 275 (2020)
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DNA Sequence and Comparative Genomics of pAPEC-O2-R, an Avian Pathogenic Escherichia coli Transmissible R Plasmid

Timothy J. Johnson, Kylie E. Siek, Sara J. Johnson and Lisa K. Nolan
Antimicrobial Agents and Chemotherapy 49 (11) 4681 (2005)
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Acquisition of Avian Pathogenic Escherichia coli Plasmids by a Commensal E. coli Isolate Enhances Its Abilities To Kill Chicken Embryos, Grow in Human Urine, and Colonize the Murine Kidney

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Infection and Immunity 74 (11) 6287 (2006)
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Subhashinie Kariyawasam, Timothy J. Johnson and Lisa K. Nolan
Infection and Immunity 74 (1) 744 (2006)
DOI: 10.1128/IAI.74.1.744-749.2006
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Contribution of the SitABCD, MntH, and FeoB Metal Transporters to the Virulence of Avian Pathogenic Escherichia coli O78 Strain χ7122

Mourad Sabri, Mélissa Caza, Julie Proulx, et al.
Infection and Immunity 76 (2) 601 (2008)
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Sequence Analysis and Characterization of a Transferable Hybrid Plasmid Encoding Multidrug Resistance and Enabling Zoonotic Potential for Extraintestinal Escherichia coli

Timothy J. Johnson, Dianna Jordan, Subhashinie Kariyawasam, et al.
Infection and Immunity 78 (5) 1931 (2010)
DOI: 10.1128/IAI.01174-09
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Specific Roles of the iroBCDEN Genes in Virulence of an Avian Pathogenic Escherichia coli O78 Strain and in Production of Salmochelins

Mélissa Caza, François Lépine, Sylvain Milot and Charles M. Dozois
Infection and Immunity 76 (8) 3539 (2008)
DOI: 10.1128/IAI.00455-08
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Complete DNA Sequence of a ColBM Plasmid from Avian Pathogenic Escherichia coli Suggests that It Evolved from Closely Related ColV Virulence Plasmids

Timothy J. Johnson, Sara J. Johnson and Lisa K. Nolan
Journal of Bacteriology 188 (16) 5975 (2006)
DOI: 10.1128/JB.00204-06
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DNA Sequence of a ColV Plasmid and Prevalence of Selected Plasmid-Encoded Virulence Genes among Avian Escherichia coli Strains

Timothy J. Johnson, Kylie E. Siek, Sara J. Johnson and Lisa K. Nolan
Journal of Bacteriology 188 (2) 745 (2006)
DOI: 10.1128/JB.188.2.745-758.2006
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Evolution of Microcin V and Colicin Ia Plasmids in Escherichia coli

Anne Jeziorowski and David M. Gordon
Journal of Bacteriology 189 (19) 7045 (2007)
DOI: 10.1128/JB.00243-07
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The Genome Sequence of Avian Pathogenic Escherichia coli Strain O1:K1:H7 Shares Strong Similarities with Human Extraintestinal Pathogenic E. coli Genomes

Timothy J. Johnson, Subhashinie Kariyawasam, Yvonne Wannemuehler, et al.
Journal of Bacteriology 189 (8) 3228 (2007)
DOI: 10.1128/JB.01726-06
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Insights into the Environmental Resistance Gene Pool from the Genome Sequence of the Multidrug-Resistant Environmental Isolate Escherichia coli SMS-3-5

W. Florian Fricke, Meredith S. Wright, Angela H. Lindell, et al.
Journal of Bacteriology 190 (20) 6779 (2008)
DOI: 10.1128/JB.00661-08
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Plasmid Replicon Typing of Commensal and Pathogenic Escherichia coli Isolates

Timothy J. Johnson, Yvonne M. Wannemuehler, Sara J. Johnson, et al.
Applied and Environmental Microbiology 73 (6) 1976 (2007)
DOI: 10.1128/AEM.02171-06
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Comparison of Extraintestinal Pathogenic Escherichia coli Strains from Human and Avian Sources Reveals a Mixed Subset Representing Potential Zoonotic Pathogens

Timothy J. Johnson, Yvonne Wannemuehler, Sara J. Johnson, et al.
Applied and Environmental Microbiology 74 (22) 7043 (2008)
DOI: 10.1128/AEM.01395-08
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Antimicrobial Resistance-Conferring Plasmids with Similarity to Virulence Plasmids from Avian Pathogenic Escherichia coli Strains in Salmonella enterica Serovar Kentucky Isolates from Poultry

W. Florian Fricke, Patrick F. McDermott, Mark K. Mammel, et al.
Applied and Environmental Microbiology 75 (18) 5963 (2009)
DOI: 10.1128/AEM.00786-09
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Evaluation of Virulence Factor Profiling in the Characterization of Veterinary Escherichia coli Isolates

Donna E. David, Aaron M. Lynne, Jing Han and Steven L. Foley
Applied and Environmental Microbiology 76 (22) 7509 (2010)
DOI: 10.1128/AEM.00726-10
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Genomic analysis of Escherichia coli strains isolated from diseased chicken in the Czech Republic

Aneta Papouskova, Martina Masarikova, Adam Valcek, et al.
BMC Veterinary Research 16 (1) (2020)
DOI: 10.1186/s12917-020-02407-2
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