Articles citing this article

The Citing articles tool gives a list of articles citing the current article.
The citing articles come from EDP Sciences database, as well as other publishers participating in CrossRef Cited-by Linking Program. You can set up your personal account to receive an email alert each time this article is cited by a new article (see the menu on the right-hand side of the abstract page).

Cited article:

QuickFit: A High-Throughput RT-qPCR-Based Assay to Quantify Viral Growth and Fitness In Vitro

Nicolas M. S. Galvez, Maegan L. Sheehan, Allen Z. Lin, Yi Cao, Evan C. Lam, Abigail M. Jackson and Alejandro B. Balazs
Viruses 16 (8) 1320 (2024)
https://doi.org/10.3390/v16081320

Antagonism and Synergism Characterize the Interactions between Four North American Potato Virus Y Strains

Prakash M. Niraula, Patricia Baldrich, Junaid A. Cheema, Hashir A. Cheema, Dejah S. Gaiter, Blake C. Meyers and Vincent N. Fondong
International Journal of Plant Biology 15 (2) 412 (2024)
https://doi.org/10.3390/ijpb15020032

Fidelity Characterization of Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus and NADC30-like Strain

Xiang Gao, Ting Bian, Peng Gao, Xinna Ge, Yongning Zhang, Jun Han, Xin Guo, Lei Zhou and Hanchun Yang
Viruses 16 (5) 797 (2024)
https://doi.org/10.3390/v16050797

Eco-friendly synthesized nanoparticles as antimicrobial agents: an updated review

Shilpa Borehalli Mayegowda, Arpita Roy, Manjula N. G., et al.
Frontiers in Cellular and Infection Microbiology 13 (2023)
https://doi.org/10.3389/fcimb.2023.1224778

Isolation and characterization of a SARS-CoV-2 variant with a Q677H mutation in the spike protein

Xiaoyu Niu, Jiayu Xu, Mingde Liu, et al.
Archives of Virology 168 (1) (2023)
https://doi.org/10.1007/s00705-022-05621-5

Rapid escape of new SARS-CoV-2 Omicron variants from BA.2-directed antibody responses

Aiste Dijokaite-Guraliuc, Raksha Das, Daming Zhou, Helen M. Ginn, Chang Liu, Helen M.E. Duyvesteyn, Jiandong Huo, Rungtiwa Nutalai, Piyada Supasa, Muneeswaran Selvaraj, Thushan I. de Silva, Megan Plowright, Thomas A.H. Newman, Hailey Hornsby, Alexander J. Mentzer, Donal Skelly, Thomas G. Ritter, Nigel Temperton, Paul Klenerman, Eleanor Barnes, Susanna J. Dunachie, Cornelius Roemer, Thomas P. Peacock, Neil G. Paterson, Mark A. Williams, et al.
Cell Reports 42 (4) 112271 (2023)
https://doi.org/10.1016/j.celrep.2023.112271

Prevalence of Human Norovirus GII.4 Sydney 2012 [P31] between 2019 and 2021 among Young Children from Rural Communities in South Africa

Ronewa Khumela, Jean-Pierre Kabue, Marcia Terezinha Baroni de Moraes, Afsatou Ndama Traore and Natasha Potgieter
Viruses 15 (8) 1682 (2023)
https://doi.org/10.3390/v15081682

iAVPs-ResBi: Identifying antiviral peptides by using deep residual network and bidirectional gated recurrent unit

Xinyan Ma, Yunyun Liang and Shengli Zhang
Mathematical Biosciences and Engineering 20 (12) 21563 (2023)
https://doi.org/10.3934/mbe.2023954

Viral Fitness and Evolution

Esteban Domingo, Carlos García-Crespo, María Eugenia Soria and Celia Perales
Current Topics in Microbiology and Immunology, Viral Fitness and Evolution 439 197 (2023)
https://doi.org/10.1007/978-3-031-15640-3_6

Rajindra Napit, Anupama Gurung, Ajit Poudel, Prajwol Manadhar, Ashok B. Chaudhary, Ajay Narayan Sharma, Samita Raut, Saman Man Pradhan, Jyotsna Joshi, Mathilde Poyet, Mathieu Groussin, Rajesh M. Rajbhandari and Dibesh B. Karmacharya
(2023)
https://doi.org/10.1101/2023.03.15.532708

Lessons that can be learned from the SARS-CoV-2 pandemic and their impact on the prophylaxis and treatment development for neglected tropical arboviruses

Danilo Rosa-Nunes, Danilo B. M. Lucchi, Robert Andreata-Santos, Luiz Mario R. Janini and Carla Torres Braconi
Frontiers in Drug Discovery 3 (2023)
https://doi.org/10.3389/fddsv.2023.1176768

VDDB: A comprehensive resource and machine learning tool for antiviral drug discovery

Shunming Tao, Yihao Chen, Jingxing Wu, et al.
MedComm – Future Medicine 2 (1) (2023)
https://doi.org/10.1002/mef2.32

Distribution of intra‐host variations and mutations in the genomes of SARS‐CoV‐2 and their implications on detection and therapeutics

Dongyan Xiong, Xiaoxu Zhang, Junping Yu and Hongping Wei
MedComm 3 (4) (2022)
https://doi.org/10.1002/mco2.186

Emerging and Re-Emerging Viral Infections: An Indian Perspective

Nandkishor J Bankar, Ashwini A Tidake, Gulshan R Bandre , et al.
Cureus (2022)
https://doi.org/10.7759/cureus.30062

Clayton Fernando Rencilin, Mohammad Yousuf Ansari, Arnab Chatterjee, Suprit Deshpande, Sohini Mukherjee, Randhir Singh, Sowrabha Jayatheertha, Poorvi M. Reddy, Payel Das, Nitin Hingankar, Deepak Rathore, Raghavan Varadarajan, Jayanta Bhattacharya and Somnath Dutta
(2022)
https://doi.org/10.1101/2022.12.03.518949

Prediction of Antiviral peptides using transform evolutionary & SHAP analysis based descriptors by incorporation with ensemble learning strategy

Shahid Akbar, Farman Ali, Maqsood Hayat, et al.
Chemometrics and Intelligent Laboratory Systems 230 104682 (2022)
https://doi.org/10.1016/j.chemolab.2022.104682

State-of-the-art cerium nanoparticles as promising agents against human viral infections

Milad Zandi, Fatemeh Hosseini, Ahmad Hosseinzadeh Adli, et al.
Biomedicine & Pharmacotherapy 156 113868 (2022)
https://doi.org/10.1016/j.biopha.2022.113868

Aekkachai Tuekprakhon, Jiandong Huo, Rungtiwa Nutalai, Aiste Dijokaite-Guraliuc, Daming Zhou, Helen M. Ginn, Muneeswaran Selvaraj, Chang Liu, Alexander J. Mentzer, Piyada Supasa, Helen M.E. Duyvesteyn, Raksha Das, Donal Skelly, Thomas G. Ritter, Ali Amini, Sagida Bibi, Sandra Adele, Sile Ann Johnson, Bede Constantinides, Hermione Webster, Nigel Temperton, Paul Klenerman, Eleanor Barnes, Susanna J. Dunachie, Derrick Crook, et al.
(2022)
https://doi.org/10.1101/2022.05.21.492554

Antagonism and Synergism Characterize the Interactions between Four North American Potato Virus Y Strains

Prakash Niraula, Patricia Baldrich, Junaid Cheema, et al.
SSRN Electronic Journal (2022)
https://doi.org/10.2139/ssrn.4193844

Genetic drift in the genome of SARS COV‐2 and its global health concern

Iqra Bano, Mehmoona Sharif and Sadia Alam
Journal of Medical Virology 94 (1) 88 (2022)
https://doi.org/10.1002/jmv.27337

Evolutionary Traits and Genomic Surveillance of SARS-CoV-2 in South America

Pablo A. Ortiz-Pineda, Carlos H. Sierra-Torres and Macoura Gadji
Global Health 2022 1 (2022)
https://doi.org/10.1155/2022/8551576

VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data

Grigorii Sukhorukov, Maryam Khalili, Olivier Gascuel, et al.
Frontiers in Bioinformatics 2 (2022)
https://doi.org/10.3389/fbinf.2022.867111

High Levels of Multiple Phage WO Infections and Its Evolutionary Dynamics Associated With Wolbachia-Infected Butterflies

Shuo Gao, Ye-Song Ren, Cheng-Yuan Su and Dao-Hong Zhu
Frontiers in Microbiology 13 (2022)
https://doi.org/10.3389/fmicb.2022.865227

Antibody escape of SARS-CoV-2 Omicron BA.4 and BA.5 from vaccine and BA.1 serum

Aekkachai Tuekprakhon, Rungtiwa Nutalai, Aiste Dijokaite-Guraliuc, et al.
Cell 185 (14) 2422 (2022)
https://doi.org/10.1016/j.cell.2022.06.005

Broad‐Spectrum Antiviral Peptides and Polymers

Agnès Kuroki, Joyce Tay, Guan Huei Lee and Yi Yan Yang
Advanced Healthcare Materials 10 (23) (2021)
https://doi.org/10.1002/adhm.202101113

ENNAVIA is a novel method which employs neural networks for antiviral and anti-coronavirus activity prediction for therapeutic peptides

Patrick Brendan Timmons and Chandralal M Hewage
Briefings in Bioinformatics 22 (6) (2021)
https://doi.org/10.1093/bib/bbab258

Revealing the relationship between solar activity and COVID-19 and forecasting of possible future viruses using multi-step autoregression (MSAR)

Mohammad Hossein Nasirpour, Abbas Sharifi, Mohsen Ahmadi and Saeid Jafarzadeh Ghoushchi
Environmental Science and Pollution Research 28 (28) 38074 (2021)
https://doi.org/10.1007/s11356-021-13249-2

Mutation Signatures and In Silico Docking of Novel SARS-CoV-2 Variants of Concern

Nariman Shahhosseini, George Babuadze, Gary Wong and Gary Kobinger
Microorganisms 9 (5) 926 (2021)
https://doi.org/10.3390/microorganisms9050926

Genetics and genomics of SARS-CoV-2: A review of the literature with the special focus on genetic diversity and SARS-CoV-2 genome detection

Azadeh Rahimi, Azin Mirzazadeh and Soheil Tavakolpour
Genomics 113 (1) 1221 (2021)
https://doi.org/10.1016/j.ygeno.2020.09.059

Correlates of SARS-CoV-2 Variants on Deaths, Case Incidence and Case Fatality Ratio among the Continents for the Period of 1 December 2020 to 15 March 2021

Wajdy J. Al-Awaida, Baker Jawabrah Al Hourani, Samer Swedan, Refat Nimer, Foad Alzoughool, Hamzeh J. Al-Ameer, Sara E. Al Tamam, Raghad Alashqar, Omar Al bawareed, Yulia Gushchina, Mohamed Samy Abousenna, Amani Marwan Ayyash, Ahmad Sharab, Sulaiman M. Alnaimat, Amer Imraish, Muhanad W. Akash and Najah R. Hadi
Genes 12 (7) 1061 (2021)
https://doi.org/10.3390/genes12071061

A proposed insight into the anti-viral potential of metallic nanoparticles against novel coronavirus disease-19 (COVID-19)

Ghadha Ibrahim Fouad
Bulletin of the National Research Centre 45 (1) (2021)
https://doi.org/10.1186/s42269-021-00487-0

Spillover of zoonotic pathogens: A review of reviews

Cecilia A. Sánchez, Joy Venkatachalam‐Vaz and John M. Drake
Zoonoses and Public Health 68 (6) 563 (2021)
https://doi.org/10.1111/zph.12846

Antiviral Drug Discovery and Development

Rouan Yao, Aleksandr Ianevski and Denis Kainov
Advances in Experimental Medicine and Biology, Antiviral Drug Discovery and Development 1322 313 (2021)
https://doi.org/10.1007/978-981-16-0267-2_12

Geographical Landscape and Transmission Dynamics of SARS-CoV-2 Variants Across India: A Longitudinal Perspective

Neha Jha, Dwight Hall, Akshay Kanakan, et al.
Frontiers in Genetics 12 (2021)
https://doi.org/10.3389/fgene.2021.753648

Prediction and Evolution of the Molecular Fitness of SARS-CoV-2 Variants: Introducing SpikePro

Fabrizio Pucci and Marianne Rooman
Viruses 13 (5) 935 (2021)
https://doi.org/10.3390/v13050935

Role of nanoparticles in tackling COVID-19 pandemic: a bio-nanomedical approach

Idris Zubairu Sadiq, Fatima Sadiq Abubakar and Bilal Ibrahim Dan-Iya
Journal of Taibah University for Science 15 (1) 198 (2021)
https://doi.org/10.1080/16583655.2021.1944488

A Case of Intragenic Recombination Dramatically Impacting the Phage WO Genetic Diversity in Gall Wasps

Dao-Hong Zhu, Cheng-Yuan Su, Xiao-Hui Yang and Yoshihisa Abe
Frontiers in Microbiology 12 (2021)
https://doi.org/10.3389/fmicb.2021.694115

Pan-genomics: Applications, Challenges, and Future Prospects

Marta Giovanetti, Alvaro Salgado, Vagner de Souza Fonseca, et al.
Pan-genomics: Applications, Challenges, and Future Prospects 237 (2020)
https://doi.org/10.1016/B978-0-12-817076-2.00011-1

Pathogenesis, biophysical stability and phenotypic variance of SAT2 foot-and-mouth disease virus

Tovhowani D. Ramulongo, Francois F. Maree, Katherine Scott, et al.
Veterinary Microbiology 243 108614 (2020)
https://doi.org/10.1016/j.vetmic.2020.108614

Polymerase Fidelity Contributes to Foot-and-Mouth Disease Virus Pathogenicity and Transmissibility In Vivo

Chen Li, Jiabao Shi, Haiwei Wang, et al.
Journal of Virology 95 (1) (2020)
https://doi.org/10.1128/JVI.01569-20

Molecular characterization of Influenza A pandemic H1N1 viruses circulating in eastern India during 2017–19: Antigenic diversity in comparison to the vaccine strains

Priyanka Saha, Madhumonti Biswas, Rudrak Gupta, et al.
Infection, Genetics and Evolution 81 104270 (2020)
https://doi.org/10.1016/j.meegid.2020.104270

High-Throughput Sequencing Facilitates Discovery of New Plant Viruses in Poland

Julia Minicka, Aleksandra Zarzyńska-Nowak, Daria Budzyńska, Natasza Borodynko-Filas and Beata Hasiów-Jaroszewska
Plants 9 (7) 820 (2020)
https://doi.org/10.3390/plants9070820

Biogenic nanoparticles: a comprehensive perspective in synthesis, characterization, application and its challenges

Sunita Patil and Rajkuberan Chandrasekaran
Journal of Genetic Engineering and Biotechnology 18 (1) 67 (2020)
https://doi.org/10.1186/s43141-020-00081-3

Better understanding and prediction of antiviral peptides through primary and secondary structure feature importance

Abu Sayed Chowdhury, Sarah M. Reehl, Kylene Kehn-Hall, Barney Bishop and Bobbie-Jo M. Webb-Robertson
Scientific Reports 10 (1) (2020)
https://doi.org/10.1038/s41598-020-76161-8

Modeling Competitive Mixtures With the Lotka-Volterra Framework for More Complex Fitness Assessment Between Strains

Afonso Dimas Martins and Erida Gjini
Frontiers in Microbiology 11 (2020)
https://doi.org/10.3389/fmicb.2020.572487

Viral fitness: history and relevance for viral pathogenesis and antiviral interventions

Esteban Domingo, Ana I de Ávila, Isabel Gallego, Julie Sheldon and Celia Perales
Pathogens and Disease 77 (2) (2019)
https://doi.org/10.1093/femspd/ftz021

The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus

Jackie E Mahar, Robyn N Hall, Mang Shi, et al.
Virus Evolution 5 (1) (2019)
https://doi.org/10.1093/ve/vez005

Evidence of Intragenic Recombination in African Horse Sickness Virus

Harry G. Ngoveni, Antoinette van Schalkwyk and J.J. Otto Koekemoer
Viruses 11 (7) 654 (2019)
https://doi.org/10.3390/v11070654

Genomic characterization, phylogenetic position and in situ localization of a novel putative mononegavirus in Lepeophtheirus salmonis

Arnfinn Lodden Økland, Are Nylund, Aina-Cathrine Øvergård, Renate Hvidsten Skoge and Heidi Kongshaug
Archives of Virology 164 (3) 675 (2019)
https://doi.org/10.1007/s00705-018-04119-3

Morgan E. Mouchka, Dillon M. Dorsey, Genna L. Malcangio, Sarah J. Medina, Elizabeth C. Stuart and Justin R. Meyer
(2019)
https://doi.org/10.1101/771998

AntiVPP 1.0: A portable tool for prediction of antiviral peptides

Jorge Félix Beltrán Lissabet, Lisandra Herrera Belén and Jorge G. Farias
Computers in Biology and Medicine 107 127 (2019)
https://doi.org/10.1016/j.compbiomed.2019.02.011

A literature review as an aid to identify strategies for mitigating ostreid herpesvirus 1 in Crassostrea gigas hatchery and nursery systems

Chris Rodgers, Isabelle Arzul, Noèlia Carrasco and Dolores Furones Nozal
Reviews in Aquaculture 11 (3) 565 (2019)
https://doi.org/10.1111/raq.12246

Taking a bite out of nutrition and arbovirus infection

James Weger-Lucarelli, Heidi Auerswald, Marco Vignuzzi, et al.
PLOS Neglected Tropical Diseases 12 (3) e0006247 (2018)
https://doi.org/10.1371/journal.pntd.0006247

Computational design of hepatitis C virus immunogens from host-pathogen dynamics over empirical viral fitness landscapes

Gregory R Hart and Andrew L Ferguson
Physical Biology 16 (1) 016004 (2018)
https://doi.org/10.1088/1478-3975/aaeec0

In-depth phylodynamics, evolutionary analysis and in silico predictions of universal epitopes of Influenza A subtypes and Influenza B viruses

Ricardo Durães-Carvalho and Marco Salemi
Molecular Phylogenetics and Evolution 121 174 (2018)
https://doi.org/10.1016/j.ympev.2018.01.008

Foot-and-mouth disease virus type O specific mutations determine RNA-dependent RNA polymerase fidelity and virus attenuation

Chen Li, Haiwei Wang, Tiangang Yuan, et al.
Virology 518 87 (2018)
https://doi.org/10.1016/j.virol.2018.01.030

Potato virus Y Transmission Efficiency from Potato Infected with Single or Multiple Virus Strains

Shaonpius Mondal, Yu-Hsuan Lin, Juliet E. Carroll, et al.
Phytopathology® 107 (4) 491 (2017)
https://doi.org/10.1094/PHYTO-09-16-0322-R

Algal production of nano-silver and gold: Their antimicrobial and cytotoxic activities: A review

Mostafa M. El-Sheekh and Hala Y. El-Kassas
Journal of Genetic Engineering and Biotechnology 14 (2) 299 (2016)
https://doi.org/10.1016/j.jgeb.2016.09.008

Antagonistic within‐host interactions between plant viruses: molecular basis and impact on viral and host fitness

Jerzy Syller and Anna Grupa
Molecular Plant Pathology 17 (5) 769 (2016)
https://doi.org/10.1111/mpp.12322

Metal nanoparticles: The protective nanoshield against virus infection

Mahendra Rai, Shivaji D. Deshmukh, Avinash P. Ingle, et al.
Critical Reviews in Microbiology 42 (1) 46 (2016)
https://doi.org/10.3109/1040841X.2013.879849

Homology-Based Identification of a Mutation in the Coronavirus RNA-Dependent RNA Polymerase That Confers Resistance to Multiple Mutagens

Nicole R. Sexton, Everett Clinton Smith, Hervé Blanc, et al.
Journal of Virology 90 (16) 7415 (2016)
https://doi.org/10.1128/JVI.00080-16

The Rasputin Effect: When Commensals and Symbionts Become Parasitic

Robin M. Overstreet and Jeffrey M. Lotz
Advances in Environmental Microbiology, The Rasputin Effect: When Commensals and Symbionts Become Parasitic 3 27 (2016)
https://doi.org/10.1007/978-3-319-28170-4_2

The transcriptomics of an experimentally evolved plant-virus interaction

Julia Hillung, Francisco García-García, Joaquín Dopazo, José M. Cuevas and Santiago F. Elena
Scientific Reports 6 (1) (2016)
https://doi.org/10.1038/srep24901

Composite Sequence–Structure Stability Models as Screening Tools for Identifying Vulnerable Targets for HIV Drug and Vaccine Development

Siriphan Manocheewa, John Mittler, Ram Samudrala and James Mullins
Viruses 7 (11) 5718 (2015)
https://doi.org/10.3390/v7112901

Reassessing Biological Threats: Implications for Cooperative Mitigation Strategies

Summer Elise Galloway, Stephanie Rachel Petzing and Catharine Grace Young
Frontiers in Public Health 3 (2015)
https://doi.org/10.3389/fpubh.2015.00251

AVP‐IC50Pred: Multiple machine learning techniques‐based prediction of peptide antiviral activity in terms of half maximal inhibitory concentration (IC50)

Abid Qureshi, Himani Tandon and Manoj Kumar
Peptide Science 104 (6) 753 (2015)
https://doi.org/10.1002/bip.22703

Temporal dynamics, diversity, and interplay in three components of the virodiversity of a Mallard population: Influenza A virus, avian paramyxovirus and avian coronavirus

Michelle Wille, Alexis Avril, Conny Tolf, et al.
Infection, Genetics and Evolution 29 129 (2015)
https://doi.org/10.1016/j.meegid.2014.11.014

Interfamilial recombination between viruses led to acquisition of a novel translation‐enhancing RNA element that allows resistance breaking

Manuel Miras, Raquel N. Sempere, Jelena J. Kraft, et al.
New Phytologist 202 (1) 233 (2014)
https://doi.org/10.1111/nph.12650

Study of the virulence of serotypes 4 and 9 of African horse sickness virus in IFNAR −/− , Balb/C and 129 Sv/Ev mice

Maria Ana de la Grandière, Fabiana Dal Pozzo, Marylène Tignon, et al.
Veterinary Microbiology 174 (3-4) 322 (2014)
https://doi.org/10.1016/j.vetmic.2014.10.006

Emergence and Transmission of Arbovirus Evolutionary Intermediates with Epidemic Potential

Kenneth A. Stapleford, Lark L. Coffey, Sreyrath Lay, et al.
Cell Host & Microbe 15 (6) 706 (2014)
https://doi.org/10.1016/j.chom.2014.05.008

AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses

Abid Qureshi, Nishant Thakur, Himani Tandon and Manoj Kumar
Nucleic Acids Research 42 (D1) D1147 (2014)
https://doi.org/10.1093/nar/gkt1191

Factors Shaping the Adaptive Landscape for Arboviruses: Implications for the Emergence of Disease

Lark L Coffey, Naomi Forrester, Konstantin Tsetsarkin, Nikos Vasilakis and Scott C Weaver
Future Microbiology 8 (2) 155 (2013)
https://doi.org/10.2217/fmb.12.139

The new French 2010 Rabbit Hemorrhagic Disease Virus causes an RHD-like disease in the Sardinian Cape hare (Lepus capensis mediterraneus)

Giantonella Puggioni, Patrizia Cavadini, Caterina Maestrale, et al.
Veterinary Research 44 (1) (2013)
https://doi.org/10.1186/1297-9716-44-96

Drug-Related Mutational Patterns in Hepatitis B Virus (HBV) Reverse Transcriptase Proteins From Iranian Treatment-Naïve Chronic HBV Patients

Mostafa Mahabadi, Mehdi Norouzi, Seyed Moayyed Alavian, et al.
Hepatitis Monthly 13 (1) (2013)
https://doi.org/10.5812/hepatmon.6712

Isolation and complete genomic characterization of pandemic H1N1/2009 influenza viruses from Cuban swine herds

Lester Josué Pérez, Carmen Laura Perera, Armando Vega, et al.
Research in Veterinary Science 94 (3) 781 (2013)
https://doi.org/10.1016/j.rvsc.2012.11.018