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Evaluation of Genomic Surveillance of SARS-CoV-2 Virus Isolates and Comparison of Mutational Spectrum of Variants in Bangladesh
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QuickFit: A High-Throughput RT-qPCR-Based Assay to Quantify Viral Growth and Fitness In Vitro
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Spillover: Mechanisms, Genetic Barriers, and the Role of Reservoirs in Emerging Pathogens
Antagonism and Synergism Characterize the Interactions between Four North American Potato Virus Y Strains
Prakash M. Niraula, Patricia Baldrich, Junaid A. Cheema, Hashir A. Cheema, Dejah S. Gaiter, Blake C. Meyers and Vincent N. Fondong International Journal of Plant Biology 15(2) 412 (2024) https://doi.org/10.3390/ijpb15020032
Fidelity Characterization of Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus and NADC30-like Strain
Xiang Gao, Ting Bian, Peng Gao, Xinna Ge, Yongning Zhang, Jun Han, Xin Guo, Lei Zhou and Hanchun Yang Viruses 16(5) 797 (2024) https://doi.org/10.3390/v16050797
Virulence and Immune Evasion Strategies of FMDV: Implications for Vaccine Design
Rapid escape of new SARS-CoV-2 Omicron variants from BA.2-directed antibody responses
Aiste Dijokaite-Guraliuc, Raksha Das, Daming Zhou, Helen M. Ginn, Chang Liu, Helen M.E. Duyvesteyn, Jiandong Huo, Rungtiwa Nutalai, Piyada Supasa, Muneeswaran Selvaraj, Thushan I. de Silva, Megan Plowright, Thomas A.H. Newman, Hailey Hornsby, Alexander J. Mentzer, Donal Skelly, Thomas G. Ritter, Nigel Temperton, Paul Klenerman, Eleanor Barnes, Susanna J. Dunachie, Cornelius Roemer, Thomas P. Peacock, Neil G. Paterson, Mark A. Williams, et al. Cell Reports 42(4) 112271 (2023) https://doi.org/10.1016/j.celrep.2023.112271
iAVPs-ResBi: Identifying antiviral peptides by using deep residual network and bidirectional gated recurrent unit
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Lessons that can be learned from the SARS-CoV-2 pandemic and their impact on the prophylaxis and treatment development for neglected tropical arboviruses
Danilo Rosa-Nunes, Danilo B. M. Lucchi, Robert Andreata-Santos, Luiz Mario R. Janini and Carla Torres Braconi Frontiers in Drug Discovery 3 (2023) https://doi.org/10.3389/fddsv.2023.1176768
Isolation and characterization of a SARS-CoV-2 variant with a Q677H mutation in the spike protein
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High Levels of Multiple Phage WO Infections and Its Evolutionary Dynamics Associated With Wolbachia-Infected Butterflies
Distribution of intra‐host variations and mutations in the genomes of SARS‐CoV‐2 and their implications on detection and therapeutics
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Clayton Fernando Rencilin, Mohammad Yousuf Ansari, Arnab Chatterjee, Suprit Deshpande, Sohini Mukherjee, Randhir Singh, Sowrabha Jayatheertha, Poorvi M. Reddy, Payel Das, Nitin Hingankar, Deepak Rathore, Raghavan Varadarajan, Jayanta Bhattacharya and Somnath Dutta (2022) https://doi.org/10.1101/2022.12.03.518949
Prediction of Antiviral peptides using transform evolutionary & SHAP analysis based descriptors by incorporation with ensemble learning strategy
Shahid Akbar, Farman Ali, Maqsood Hayat, et al. Chemometrics and Intelligent Laboratory Systems 230 104682 (2022) https://doi.org/10.1016/j.chemolab.2022.104682
Aekkachai Tuekprakhon, Jiandong Huo, Rungtiwa Nutalai, Aiste Dijokaite-Guraliuc, Daming Zhou, Helen M. Ginn, Muneeswaran Selvaraj, Chang Liu, Alexander J. Mentzer, Piyada Supasa, Helen M.E. Duyvesteyn, Raksha Das, Donal Skelly, Thomas G. Ritter, Ali Amini, Sagida Bibi, Sandra Adele, Sile Ann Johnson, Bede Constantinides, Hermione Webster, Nigel Temperton, Paul Klenerman, Eleanor Barnes, Susanna J. Dunachie, Derrick Crook, et al. (2022) https://doi.org/10.1101/2022.05.21.492554
VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data
Correlates of SARS-CoV-2 Variants on Deaths, Case Incidence and Case Fatality Ratio among the Continents for the Period of 1 December 2020 to 15 March 2021
Wajdy J. Al-Awaida, Baker Jawabrah Al Hourani, Samer Swedan, Refat Nimer, Foad Alzoughool, Hamzeh J. Al-Ameer, Sara E. Al Tamam, Raghad Alashqar, Omar Al bawareed, Yulia Gushchina, Mohamed Samy Abousenna, Amani Marwan Ayyash, Ahmad Sharab, Sulaiman M. Alnaimat, Amer Imraish, Muhanad W. Akash and Najah R. Hadi Genes 12(7) 1061 (2021) https://doi.org/10.3390/genes12071061
Antimicrobial Peptides and Their Applications in Biomedical Sector
Rouan Yao, Aleksandr Ianevski and Denis Kainov Advances in Experimental Medicine and Biology, Antiviral Drug Discovery and Development 1322 313 (2021) https://doi.org/10.1007/978-981-16-0267-2_12
Spillover of zoonotic pathogens: A review of reviews
Cecilia A. Sánchez, Joy Venkatachalam‐Vaz and John M. Drake Zoonoses and Public Health 68(6) 563 (2021) https://doi.org/10.1111/zph.12846
Mutation Signatures and In Silico Docking of Novel SARS-CoV-2 Variants of Concern
Revealing the relationship between solar activity and COVID-19 and forecasting of possible future viruses using multi-step autoregression (MSAR)
Mohammad Hossein Nasirpour, Abbas Sharifi, Mohsen Ahmadi and Saeid Jafarzadeh Ghoushchi Environmental Science and Pollution Research 28(28) 38074 (2021) https://doi.org/10.1007/s11356-021-13249-2
Molecular characterization of Influenza A pandemic H1N1 viruses circulating in eastern India during 2017–19: Antigenic diversity in comparison to the vaccine strains
Better understanding and prediction of antiviral peptides through primary and secondary structure feature importance
Abu Sayed Chowdhury, Sarah M. Reehl, Kylene Kehn-Hall, Barney Bishop and Bobbie-Jo M. Webb-Robertson Scientific Reports 10(1) (2020) https://doi.org/10.1038/s41598-020-76161-8
Pan-genomics: Applications, Challenges, and Future Prospects
Viral fitness: history and relevance for viral pathogenesis and antiviral interventions
Esteban Domingo, Ana I de Ávila, Isabel Gallego, Julie Sheldon and Celia Perales Pathogens and Disease 77(2) (2019) https://doi.org/10.1093/femspd/ftz021
Genomic characterization, phylogenetic position and in situ localization of a novel putative mononegavirus in Lepeophtheirus salmonis
Arnfinn Lodden Økland, Are Nylund, Aina-Cathrine Øvergård, Renate Hvidsten Skoge and Heidi Kongshaug Archives of Virology 164(3) 675 (2019) https://doi.org/10.1007/s00705-018-04119-3
Evidence of Intragenic Recombination in African Horse Sickness Virus
The Rasputin Effect: When Commensals and Symbionts Become Parasitic
Robin M. Overstreet and Jeffrey M. Lotz Advances in Environmental Microbiology, The Rasputin Effect: When Commensals and Symbionts Become Parasitic 3 27 (2016) https://doi.org/10.1007/978-3-319-28170-4_2
Antagonistic within‐host interactions between plant viruses: molecular basis and impact on viral and host fitness
The transcriptomics of an experimentally evolved plant-virus interaction
Julia Hillung, Francisco García-García, Joaquín Dopazo, José M. Cuevas and Santiago F. Elena Scientific Reports 6(1) (2016) https://doi.org/10.1038/srep24901
Is sunspot activity a factor in influenza pandemics?
Temporal dynamics, diversity, and interplay in three components of the virodiversity of a Mallard population: Influenza A virus, avian paramyxovirus and avian coronavirus